Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00858 ATGGCGGAAGAACACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGCGCTAATAATTGTGGCTTCTTTGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGCCTCAAAGAACAAGAACAAGCCTCTACCAAATCCACCATCGAAGCCGCTCTCTCAGCCTCATCTTCTTCTTCTTCTCCTTCCTCTTCACTGATCGATCCTCCTCCCGTTTCCCCTGTTGTAGCCTTGCCTTCGCCGGACACAGATCTGACCATCCCGCCCCTTGCAGCGGCTGGATCTGAGGCGACGATCCAGTCGTGCCCAAACCCGAACCCGAATCGGTGTTCGTCGTGCCGTAAGAAAGTCGGTTTGACCGGGTTCAGATGCAGATGCGGAATCACGTTCTGTGGAGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGTGCGAACCCCGTCGTGAAAGCCGACAAACTGGAGAGAATTTGA 522 53.83 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSSSSPSSSLIDPPPVSPVVALPSPDTDLTIPPLAAAGSEATIQSCPNPNPNRCSSCRKKVGLTGFRCRCGITFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3999737 4000258 - CmaCh07G008580.1 Cma07g00858 298173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00858 173 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Cma07g00858 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Cma07g00858 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Cma07g00858 173 MobiDBLite consensus disorder prediction 50 70 - -
Cma07g00858 173 Gene3D - 95 169 IPR035896 -
Cma07g00858 173 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 173 - -
Cma07g00858 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
Cma07g00858 173 SUPERFAMILY AN1-like Zinc finger 107 168 IPR035896 -
Cma07g00858 173 MobiDBLite consensus disorder prediction 50 79 - -
Cma07g00858 173 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Cma07g00858 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Cma07g00858 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 173 - -
Cma07g00858 173 Gene3D - 1 70 - -
Cma07g00858 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00858 Cma-Chr7:3999737 Cma20g00165 Cma-Chr20:804026 1.31E-59 dispersed
Cma02g01326 Cma-Chr2:7767056 Cma07g00858 Cma-Chr7:3999737 2.79E-58 wgd
Cma03g01162 Cma-Chr3:7805896 Cma07g00858 Cma-Chr7:3999737 3.48E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00858 - - bhj:120073734 280.796