Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00864 ATGGGATCTAATACATGTGAAATTGTTGAAGCAAGGGAAGAAATTAAGGCTGTTCAAAGTAAGGTAGAATCTCGTCATTCGGATTTTGTATCTCACCGAGATCGGAAACTTTCTGCATTGAAAATTGGATTCAAGGGATTTTTAGAGGATGATATCAATCAGCTTTTTGAGTCGATTAGTATTAAAAATGCATCCAAGAGCTTAGGTCATTCACAAGTAGATGTAAATGCGCTGAGAAAAAGTACGCTAAAGAAGCCAATAAGTGTTGGCATGCCTTGCTCGCCAGGTATTGGTACTTCTGATTCTGGTAGTTTGAAGCAGGCACTCAGGGAACTATGCCTTTCAAAGGCGTCTGAGATGGCTGCTATGAAAAGATCATCAAAACCAGCTACCTTGTCAAGACTCTCGGAAGCTGGCCGGATCAAGACATTGTACAATTCAGTTATGGTTGAAGCCACTGAGTCAGGCTCTTCTTCAGATAACAGTAAGGGGGGGCGTGTGGTTGAAATATCCCTGGTTCCAGAGGGCAAAAAAAAGAACGTTGAGCAGAGACTTGAGAATGTCCAAGCATCTGCTGTTAAATCACCAGCTGAAAGTTCTCATTCTTCTCCTCAGTTCACGGTTACGAAAACACAAAGTTCTATGGAGGTTGGTACTCTCGAACAAAACGTCAATACCACTCTGTCAAGGAAAGTTGGACCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACCCCACCATCTGTATCTTCTTGTACGATTAAGAAGGTATTAGAGAAGGAGAAGAAGATTCTTGTCTCGAGCAGGGTAGGAAATAAAGTGTCATCATCCAAGGCTGGACGGAAAGGTCGGCTGCAAACTGCATCTTCATCTAAGTTGGTTAGTGGCAATAAGGTAAGCAAGTTATCTAGAAGTAATTCCCGTTCGATCAAACCAGTTATTCGGAACAAGGGGCTGGTTAAAAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTAAATGGCGATACGGATCCTAGTAAAAAGAAGTTGATATGTGAGAGGTGCCACTGCGCATTGAACAGTGCAGCTAAAGACTCGAAGAAGGGCTCTGCTTCCCAGTTTAGTGCTCTTGGTACTGATGTAAATATGGCTAGTTCAAAATCTGGTGCTAACAAATCAGGCATCACGGATGGCAAGGCTTCTGATGTTCGAGTAAAAAAAAATACAAGGGTACGAGATAAGGGTGAGTTTTCTCAAAGCTCAAAAAGTAGTCAAGGCGAGTACAGTAGCAGTACTACGAGTATTATAAGTGATGACTGCAATGGGCATGGATCGAGTAATGGTAACAGACCTCATATGTCGAAAGATGTAAGGTGGGAAGCCATACGTCACTCACAATTGCAGCATGGGGTTCTCAGCTTGAGGCATTTCAATCTCTTAAAGAAGCTTGGTTGTGGGGACATTGGAACGGTGTATCTTGCCGAGCTAACTGGTACTAATTGCCTATTTGCCATTAAGGTCATGGACAACGAGTTTCTAGCAAGACGGAAGAAAATGCCGAGAGCGCAAACCGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCAACACTTTATGTTCAATTTACTTCAGATAATCTATCATGTCTTGTCATGGAATATTGTCCTGGTGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCCGAGTTTTTCCCGAGCCTGCAGCAAGATTTTATGTTGCTGAGGTCCTCCTTGCATTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCCGAGAACATTCTTGTCAGAGAAGATGGTCACATAATGCTCACCGACTTCGACCTGTCGCTTAGGTGCACGGTCTGTCCAACACTCCTGAAGTCATCATCCTCCGACTCAGACTTGGCGAAGACATCAGGTCCATGTACAGATTCTAGTTGTGCTGAGCCTTTTTGCCTTGAACCATCATGCCAAGTCCCATGCTTCAGCCCAAGGTTCTTACCAGCTGCTTCCAAAACAAGGAAGTCCAAACCCGACCTCACAACTCAGTTCAGGTCATTGCCCCAGCTCGTTGCTGAACCCACCGATGCACGATCGAATTCCTTCGTTGGCACTCACGAGTATTTGGCACCGGAGATCATCAAAGGAGAGGGTCATGGCGCTGCAGTCGATTGGTGGACGTTTGGTGTTTTTCTCTATGAACTTCTATATGGTAGAACCCCTTTCAAGGGATCCAACAACGAAGAGACATTAGCCAATGTAGTACTGCAGAGCCTCAGTTTTCCCGACAGCCCGATCGTTAGTTTCCAAGCAAGGGATCTTATCCGAGGGCTGTTAGTGAAGGAGCCTGAAAGTCGATTCGGGACGGAAAAAGGAGCGGCCGAAATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCGTTGATCCGTTGTGCAATTCCTCCAGAAGTCCCGGAGCAAAAAGGAAAGCATCAACCATGGAAAGAGACAGTCGCCATGGCTGGCTCAGATTCCTCTCGTTTGCATTTCTCTCGCCTCCGCTCCGCTCCGATTCGCGGTTTGTCCCTTTCCTCTCTGACGGTCTCAATATCTTGCCGTCCGGAGTCTTCAATCACCCACCGGGCAAGGATATTTCCCAGGAGCAGTATATCTATCGATAGAAGTAAAACGAAAAGGAGAGTCCGATTGAAGTATAAGCTGGACATCATACTGTCTTCAAAAATGCCCAAGATTAAGACAAACCGTGTCAAGTATCCGGAGGGATGGGAGCTAATTGAACCAACTCTCAGAGAATTGCAAGCTAAGATGAGAGAAGCTGAGAATGATCCACATGATGGTAAGAGAAAATGTGAGACATTGTGGCCTATATTCAAAATAGCGCATCAGAAAAGCCGCTATATCTTTGATCTCTATCATCGAAGGAAGGAGATATCCAAAGAATTGTTTGAATTCTGTTTGGACCAAGGCTATGCTGATCGTAACTTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTTTGTGTTGTCTAAGATGCATACAACCTCGAGATCATAATTTTGCGACGACGTGCGTGTGCCGGGTTCCCAAGCACCTAAGGGAGGAGAAGGTTATCGAGTGTGTGCATTGCGGTTGCAGGGGCTGTGCGAGTGGCGATTGA 3204 45.07 MGSNTCEIVEAREEIKAVQSKVESRHSDFVSHRDRKLSALKIGFKGFLEDDINQLFESISIKNASKSLGHSQVDVNALRKSTLKKPISVGMPCSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKPATLSRLSEAGRIKTLYNSVMVEATESGSSSDNSKGGRVVEISLVPEGKKKNVEQRLENVQASAVKSPAESSHSSPQFTVTKTQSSMEVGTLEQNVNTTLSRKVGPQTLKAELEKEEESITPPSVSSCTIKKVLEKEKKILVSSRVGNKVSSSKAGRKGRLQTASSSKLVSGNKVSKLSRSNSRSIKPVIRNKGLVKKKVKQDLSSPTCSSSTYNAVNGDTDPSKKKLICERCHCALNSAAKDSKKGSASQFSALGTDVNMASSKSGANKSGITDGKASDVRVKKNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDCNGHGSSNGNRPHMSKDVRWEAIRHSQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVCPTLLKSSSSDSDLAKTSGPCTDSSCAEPFCLEPSCQVPCFSPRFLPAASKTRKSKPDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLSFPDSPIVSFQARDLIRGLLVKEPESRFGTEKGAAEIKQHPFFEGLNWALIRCAIPPEVPEQKGKHQPWKETVAMAGSDSSRLHFSRLRSAPIRGLSLSSLTVSISCRPESSITHRARIFPRSSISIDRSKTKRRVRLKYKLDIILSSKMPKIKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELFEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQPRDHNFATTCVCRVPKHLREEKVIECVHCGCRGCASGD 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4029515 4035801 + CmaCh07G008640.1 Cma07g00864 298179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00864 1067 MobiDBLite consensus disorder prediction 405 423 - -
Cma07g00864 1067 MobiDBLite consensus disorder prediction 188 213 - -
Cma07g00864 1067 Pfam Protein kinase domain 713 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00864 1067 Pfam Protein kinase domain 484 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00864 1067 ProSiteProfiles Protein kinase domain profile. 483 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00864 1067 ProSitePatterns G10 protein signature 1. 1022 1044 IPR018230 GO:0005634
Cma07g00864 1067 Gene3D Transferase(Phosphotransferase) domain 1 563 631 - -
Cma07g00864 1067 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Cma07g00864 1067 CDD STKc_phototropin_like 481 834 - -
Cma07g00864 1067 Gene3D Transferase(Phosphotransferase) domain 1 709 834 - -
Cma07g00864 1067 MobiDBLite consensus disorder prediction 331 345 - -
Cma07g00864 1067 MobiDBLite consensus disorder prediction 273 345 - -
Cma07g00864 1067 PANTHER FLIPPASE KINASE 1-RELATED 3 837 - -
Cma07g00864 1067 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 837 - -
Cma07g00864 1067 PRINTS G10 protein signature 1019 1044 IPR001748 GO:0005634
Cma07g00864 1067 PRINTS G10 protein signature 1055 1064 IPR001748 GO:0005634
Cma07g00864 1067 PRINTS G10 protein signature 969 992 IPR001748 GO:0005634
Cma07g00864 1067 PRINTS G10 protein signature 934 954 IPR001748 GO:0005634
Cma07g00864 1067 PRINTS G10 protein signature 993 1018 IPR001748 GO:0005634
Cma07g00864 1067 Pfam G10 protein 923 1065 IPR001748 GO:0005634
Cma07g00864 1067 SMART serkin_6 483 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00864 1067 MobiDBLite consensus disorder prediction 273 316 - -
Cma07g00864 1067 MobiDBLite consensus disorder prediction 424 439 - -
Cma07g00864 1067 ProSitePatterns G10 protein signature 2. 1055 1064 IPR018230 GO:0005634
Cma07g00864 1067 SUPERFAMILY Protein kinase-like (PK-like) 458 836 IPR011009 -
Cma07g00864 1067 MobiDBLite consensus disorder prediction 390 439 - -
Cma07g00864 1067 Gene3D Phosphorylase Kinase; domain 1 481 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00864 Cma-Chr7:4029515 Cma20g00180 Cma-Chr20:873534 0 dispersed
Cma03g01170 Cma-Chr3:7834652 Cma07g00864 Cma-Chr7:4029515 2.01E-104 transposed
Cma13g00287 Cma-Chr13:2544201 Cma07g00864 Cma-Chr7:4029515 6.27E-91 transposed
Cma02g01339 Cma-Chr2:7843244 Cma07g00864 Cma-Chr7:4029515 0 wgd
Cma03g01169 Cma-Chr3:7831679 Cma07g00864 Cma-Chr7:4029515 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68705 PF00069 Pkinase 9.60E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00864 - K08286 csv:101210027 1418.29