Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00874 ATGGAAGCTCATGAAAGTAGGGGTGGAGGAGTGGATGAGAAGAAGAAGAGGTTCAGTCAAGATCAGTTGGAGTCATTGGAGAGAAGCTTTCAAGAGGAAGTGAAGCTTGAACCTGACAGAAAAATGAAGCTATCAAAGGAGATTGGACTCCAACCAAGGCAAATAGCGGTGTGGTTTCAGAATAGAAGAGCTCGCTCAAAGGTTAAGCAGCTTCAGCATCTCTATGACACTCTCAAACAAGAATTTGACGCCATTTCTATGGAAAAAATTGACCTTCAACAACAGGTGAGGGAACTAAGAAGCATGCTAAGAGAACAAGCAGTAAGGAATCACGGGTCGATGGCTTACATGACCGTCTCCGAGGAAGAGGCGGCAGAGAGCACAGCAGAGGGCGTTCGGAGCTGTAATAATCACATCTTTAATGTCGAAAATGTCGACCAAATATCAGCTTCTTCAATTCCTTCACTCTGGTCTTCTTCTCAAGCTGCTCACTTGCCTTCTTATCCATAA 510 44.51 MEAHESRGGGVDEKKKRFSQDQLESLERSFQEEVKLEPDRKMKLSKEIGLQPRQIAVWFQNRRARSKVKQLQHLYDTLKQEFDAISMEKIDLQQQVRELRSMLREQAVRNHGSMAYMTVSEEEAAESTAEGVRSCNNHIFNVENVDQISASSIPSLWSSSQAAHLPSYP 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4111648 4112251 + CmaCh07G008740.1 Cma07g00874 298189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00874 169 MobiDBLite consensus disorder prediction 1 24 - -
Cma07g00874 169 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 12 146 - -
Cma07g00874 169 Pfam Homeodomain 14 67 IPR001356 GO:0003677
Cma07g00874 169 Gene3D - 8 74 - -
Cma07g00874 169 Coils Coil 61 95 - -
Cma07g00874 169 ProSiteProfiles 'Homeobox' domain profile. 9 69 IPR001356 GO:0003677
Cma07g00874 169 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 146 IPR045224 GO:0003700
Cma07g00874 169 PRINTS Lambda-repressor HTH signature 40 49 IPR000047 GO:0003677
Cma07g00874 169 PRINTS Lambda-repressor HTH signature 49 65 IPR000047 GO:0003677
Cma07g00874 169 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
Cma07g00874 169 ProSitePatterns 'Homeobox' domain signature. 44 67 IPR017970 GO:0000981|GO:0006355
Cma07g00874 169 CDD homeodomain 14 70 IPR001356 GO:0003677
Cma07g00874 169 SMART HOX_1 12 73 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00874 - - - cmax:111471145 317.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00431 Cma07g00874 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00874 Cma-Chr7:4111648 Cma04g02756 Cma-Chr4:18528070 2.84E-28 dispersed
Cma14g00257 Cma-Chr14:1120366 Cma07g00874 Cma-Chr7:4111648 3.49E-50 wgd
Cma03g01182 Cma-Chr3:7898781 Cma07g00874 Cma-Chr7:4111648 5.24E-45 wgd
Cma06g00431 Cma-Chr6:1992141 Cma07g00874 Cma-Chr7:4111648 3.98E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1067 . . Bda01g00378 Bda03g00698 . Bpe03g01259 . Bma10g00067 Cmo06g00428 Cmo14g00247 . Cma07g00874 Car03g01067 . Sed14g0344 Cpe10g00259 Cpe08g01057 Bhi03g01488 Tan03g1160 Cmetu08g1203 . Hepe04g0996 . . Cla04g00953 Cam04g0993 Cec04g1119 Cco04g1177 Clacu04g1022 Cmu04g1007 Cre04g1063 Cone3ag0210 Cone10ag0192 . . Lsi01g01262 Csa06g02646 Chy08g00904 Cme04g02449 Blo07g01368 . . Bda05g01196 . Bpe02g00744 . . Sed02g0582 Cmo03g01175 . Cma06g00431 . Car06g00370 Car14g00235 Cpe03g00223 Cpe19g00447 Bhi11g02000 Tan08g1793 Cmetu04g0403 . . . . Cla10g01857 Cam10g1913 Cec10g1968 Cco10g1941 Clacu10g1929 Cmu10g2673 Cre10g2062 Lsi03g01953 Csa03g03360 Chy04g01982 Cme08g01238
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001207 3 2 1 3 3 2 4 2 2 2 2 2 2 2 2 4 2 2 5 2 2 3 2 3 3 2 2 6 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35417 PF00046 Homeodomain 1.20E-16 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00874 Cma_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0