Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00875 ATGGTGTTGAAGACCGAGCTCTGTCGATTCAGTGGCGCGAAGATATATCCGGGTAGAGGAATCAGATTTATCCGTGCAGATTCACAGGTTTTCCTGTTTTTAAACTCCAAATGCAAGAGGTACTTCCACAACAAGCTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAAAAGAAGAGAGCTGAAAAGCCCGAGGTTCGTGATGCTGCTAGGGAGGCAGCCCTCCGGGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAGAAAAAGGCAAAGAAGGCCGAAGTGATGGCCAAAACACAGAAGACACAGACCAAGGCTAACGTTGGTAGGGGGGGAGCTGCACCCAAAGGACCAAAACTTGGCGGCGGCGGCGGCAAACGTTGA 498 48.8 MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFLNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQTKANVGRGGAAPKGPKLGGGGGKR 165
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 4112460 4114245 - CmaCh07G008750.1 Cma07g00875 298190
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00875 165 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Cma07g00875 165 SMART 4TRASH 8 46 IPR011017 -
Cma07g00875 165 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Cma07g00875 165 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Cma07g00875 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Cma07g00875 165 Gene3D - 69 138 - -
Cma07g00875 165 MobiDBLite consensus disorder prediction 121 165 - -
Cma07g00875 165 Coils Coil 112 139 - -
Cma07g00875 165 PANTHER 60S RIBOSOMAL PROTEIN L24 1 165 IPR000988 -
Cma07g00875 165 MobiDBLite consensus disorder prediction 121 136 - -
Cma07g00875 165 PANTHER 60S RIBOSOMAL PROTEIN L24 1 165 - -
Cma07g00875 165 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00875 Cma-Chr7:4112460 Cma09g00159 Cma-Chr9:682389 1.45E-19 dispersed
Cma14g00256 Cma-Chr14:1117867 Cma07g00875 Cma-Chr7:4112460 1.90E-84 wgd
Cma03g01183 Cma-Chr3:7903578 Cma07g00875 Cma-Chr7:4112460 2.02E-105 wgd
Cma06g00430 Cma-Chr6:1988523 Cma07g00875 Cma-Chr7:4112460 1.84E-89 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00875 K02896 - csv:101206866 247.669