Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00875 | ATGGTGTTGAAGACCGAGCTCTGTCGATTCAGTGGCGCGAAGATATATCCGGGTAGAGGAATCAGATTTATCCGTGCAGATTCACAGGTTTTCCTGTTTTTAAACTCCAAATGCAAGAGGTACTTCCACAACAAGCTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAAAAGAAGAGAGCTGAAAAGCCCGAGGTTCGTGATGCTGCTAGGGAGGCAGCCCTCCGGGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAGAAAAAGGCAAAGAAGGCCGAAGTGATGGCCAAAACACAGAAGACACAGACCAAGGCTAACGTTGGTAGGGGGGGAGCTGCACCCAAAGGACCAAAACTTGGCGGCGGCGGCGGCAAACGTTGA | 498 | 48.8 | MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFLNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQTKANVGRGGAAPKGPKLGGGGGKR | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4112460 | 4114245 | - | CmaCh07G008750.1 | Cma07g00875 | 298190 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00875 | 165 | CDD | Ribosomal_L24e_L24 | 3 | 56 | IPR000988 | - | |
| Cma07g00875 | 165 | SMART | 4TRASH | 8 | 46 | IPR011017 | - | |
| Cma07g00875 | 165 | Pfam | Ribosomal protein L24e | 4 | 67 | IPR000988 | - | |
| Cma07g00875 | 165 | ProSitePatterns | Ribosomal protein L24e signature. | 10 | 27 | IPR023442 | - | |
| Cma07g00875 | 165 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 6 | 58 | - | - | |
| Cma07g00875 | 165 | Gene3D | - | 69 | 138 | - | - | |
| Cma07g00875 | 165 | MobiDBLite | consensus disorder prediction | 121 | 165 | - | - | |
| Cma07g00875 | 165 | Coils | Coil | 112 | 139 | - | - | |
| Cma07g00875 | 165 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 1 | 165 | IPR000988 | - | |
| Cma07g00875 | 165 | MobiDBLite | consensus disorder prediction | 121 | 136 | - | - | |
| Cma07g00875 | 165 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 1 | 165 | - | - | |
| Cma07g00875 | 165 | Gene3D | Ribosomal protein L24e | 3 | 64 | IPR038630 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g00430 | Cma07g00875 | CCT | |
| Cma07g00875 | Cma14g00256 | CCT | |
| Cma07g00875 | Cma14g00256 | ECH | |
| Cma06g00430 | Cma07g00875 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00875 | Cma-Chr7:4112460 | Cma09g00159 | Cma-Chr9:682389 | 1.45E-19 | dispersed | |
| Cma14g00256 | Cma-Chr14:1117867 | Cma07g00875 | Cma-Chr7:4112460 | 1.90E-84 | wgd | |
| Cma03g01183 | Cma-Chr3:7903578 | Cma07g00875 | Cma-Chr7:4112460 | 2.02E-105 | wgd | |
| Cma06g00430 | Cma-Chr6:1988523 | Cma07g00875 | Cma-Chr7:4112460 | 1.84E-89 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00875 | K02896 | - | csv:101206866 | 247.669 |