Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00876 ATGGACAGTAAGAAGCAAGACGAGGATCAGACCGATAGCAGCGATTACACCTCAGAGGACGAAGGAACTGAGGATTACCGGCGAGGAGGCTACCACGCCGTTCGAATTGGCGACACTTTCAAGAATGGTAGATATGTGGTTCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACTGTTTGGCTTGCCTGGGACATCCAATCCTCTCGATATGTGGCTCTCAAAGTACAGAAGAGCGCTCAGCACTATACTGAGGCAGCTATGGATGAGATTACAATCTTGAAACAGATTGCAGACGGAGACGCTGATGATAAGAAATGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGACCTAATGGGCAGCATGTTTGTATGATTTTTGAGTATTTGGGGGATAATCTATTGACACTAATCAAGTATACTGACTACCGTGGATTACCGATTCATATGGTTAAGGAGATATGTTTTCATATATTGGTTGGTTTGGATTACTTGCATAAACAGCTCTCTATTATACATACTGATTTGAAGCCTGAAAATATTCTGTTACTTTCGATGATTGACCCATCAAAGGATCCCAGAAAATCTGGCACCCCTCTTATTCTTCCAACTAGCAAGGACAAGGCGACATTGGAGTGTGGGATTTCGAAAGACATAAAATTATCAAATGGGGATTTTACTAAACACCACAAGAGAAACATTCGACGAAAGGCGAAGCAAGCTGCTCTGGGATGTGTGGATAAGGAAATGACTGCGGAGGCTGATGCTAATGCAGAGACATCTCGTACCATTGAATCATCTCCTAACATGAAGCCGAGCACTTGTGCTACAGAGGAAAAATCAACTAGTTCTTTCAGTACAAATCGATCATCTGATGCTGATGGAGAAAAGGGCGGTGGGGAAGAAAATCAAGTCGCCAAGAAAGGGAGTCGCTTGAGAAAGAAGATGTTATTGGCTTCAGTGGATCTGAATTGCAAGTTGGTTGATTTTGGAAATGCATGTTGGACATACAAACAGTTTACAAATGACATTCAGACGAGACAGTATCGGTGCCCCGAAGTTATCCTTGGATCAAAGTATTCTACATCAGCAGATCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCAACTGGTGATGTACTCTTTGACCCTCACAGTGGTGACAACTTTGACAGAGATGAGGACCACTTAGCTTTGATGATGGAACTTCTAGGAATGATGCCACGCAAGATTGCTTTCGGCGGTCGCTATTCTCGAGATTTCTTCAACCGATATGGCAATTTGAGGCACATCCGAAGGTTACGTTTCTGGCCATTAAACAAAGTTCTGATGGAAAAGTATGATTTCAACGAACAAGATGCAACTCAAATGGCAGAATTTCTAGCTCCAATCCTCGATTTTGTTCCAGAAAACCGACCCTCTGCAGGGCAATGCCTTCTTCATCCATGGATGAATGCTGTGCCTCGGTTGTTGGAACCATCTCAGGATCCCGGAACTTCCGAGGGGAAGATGATGGAGAAGGAAGTTATGGAGGCAATGGAGGATGAAATGAGAAATATTGCCATTAGTTCAGAATCTGAACTAGCTGATGATTCCCAGCAGTCCAAGTCCAAGACCAGCAAAAGCACTTCCTGA 1641 43.81 MDSKKQDEDQTDSSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDIQSSRYVALKVQKSAQHYTEAAMDEITILKQIADGDADDKKCVVKLLDHFKHSGPNGQHVCMIFEYLGDNLLTLIKYTDYRGLPIHMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGTPLILPTSKDKATLECGISKDIKLSNGDFTKHHKRNIRRKAKQAALGCVDKEMTAEADANAETSRTIESSPNMKPSTCATEEKSTSSFSTNRSSDADGEKGGGEENQVAKKGSRLRKKMLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRYGNLRHIRRLRFWPLNKVLMEKYDFNEQDATQMAEFLAPILDFVPENRPSAGQCLLHPWMNAVPRLLEPSQDPGTSEGKMMEKEVMEAMEDEMRNIAISSESELADDSQQSKSKTSKSTS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4124565 4127615 + CmaCh07G008760.1 Cma07g00876 298191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00876 546 ProSiteProfiles Protein kinase domain profile. 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00876 546 SMART serkin_6 45 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00876 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 543 - -
Cma07g00876 546 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Cma07g00876 546 MobiDBLite consensus disorder prediction 518 546 - -
Cma07g00876 546 MobiDBLite consensus disorder prediction 1 25 - -
Cma07g00876 546 Pfam Protein kinase domain 45 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00876 546 Pfam Protein kinase domain 319 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00876 546 MobiDBLite consensus disorder prediction 255 308 - -
Cma07g00876 546 MobiDBLite consensus disorder prediction 527 546 - -
Cma07g00876 546 SUPERFAMILY Protein kinase-like (PK-like) 40 496 IPR011009 -
Cma07g00876 546 MobiDBLite consensus disorder prediction 257 294 - -
Cma07g00876 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cma07g00876 546 Gene3D Phosphorylase Kinase; domain 1 21 128 - -
Cma07g00876 546 Gene3D Transferase(Phosphotransferase) domain 1 129 487 - -
Cma07g00876 546 PANTHER SERINE KINASE-LIKE PROTEIN 12 543 - -
Cma07g00876 546 CDD STKc_SRPK 34 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01367 Cma-Chr2:7977071 Cma07g00876 Cma-Chr7:4124565 0 dispersed
Cma03g00622 Cma-Chr3:5414816 Cma07g00876 Cma-Chr7:4124565 1.63E-166 dispersed
Cma07g00876 Cma-Chr7:4124565 Cma05g00608 Cma-Chr5:3059476 2.03E-14 dispersed
Cma20g00539 Cma-Chr20:2597759 Cma07g00876 Cma-Chr7:4124565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68706 PF00069 Pkinase 5.20E-19 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00876 K08832 - csv:101206384 978.778