Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00877 ATGAAGCTGCCGATATTTGTAATCCCTCTGGTTGCCGTTTCTTGTCTTCTAGCTGTCTTGGGTCCTCAGTTTTCCTCCGACTGGACCAGTTTCTTCGATAACTATGCTTCCGCTTGGAGCTCTGTTTCTTCTCCCTCCGAAACAGAGGATTTTCGTTCCAATACGACGGCGGCGGTCAACGACTCTGTTTCAAACCACTCTGTTTCCTCTCCTTTTTCTTCTTCTCCGCCGCCTCCGCCGCCGCCGTCGTCGTCGTGGTCCTCATCCTCACCACCACCGCCGATCGATGAAAAACAGAGTCTTCCACAGCTCCCAAACATGACGACAGTCAACGCAGTTTTGGAAGAAACCGCCATTAATGAAGGGAGAAACGTTTCGTCTGAAGGTAATTATGAACCAGCGGTGGTGAAGTCCAGAAAACAGAGGGAATTTACAAAATTAGAAAAAATCGAAGCAGGGCTTAGACGAGCAAGAGCCGCCATTAAAGAAGCCAAGTTCTTGAACCAAACCCATGATCCTGATCTTGTTCCCAATGGTCCGATGTATTGGAATGCCAAAGCGTTTCACAGGAGCTACTTAGAAATGGAGAAGGAGCTGAAGATCTTCGTGTATGAGGAAGGAGAGCCTCCCCTGTTTCACAATGGCCCCTGCAAGAGCATTTACTCGACCGAAGGCAACTTCATCCACGCCATTGAAATGGACACCCGGTTTCGAACCAAAGATCCCGATAAAGCCCATGTCTTTTTCCTTCCTCTAAGTGTTGCCATGCTCGTTCAGTTCGTCTACGTGCGCGACTCCCATGACTTCACACCGATACGACGCACAGTCATCGATTATGTCAATGTCATTCGAACCAAATATCCGTTCTGGAATCGCACCCTCGGCGCCGATCATTTCATGCTGTCCTGCCATGATTGGGGGCCGGAAGCTTCAAGATCAGTTCCCCATTTGTACAAAAACTCCATTAGAGTACTCTGCAACGCCAACACGTCCGAAGGTTTCAACCCGTCAAAGGACATTTCCTTCCCAGAAATCAACCTCCAAACGGGTTTCTTGACAGGAATTATAGGCGGCCCATCTCCCTCCCGCCGCCCAATTCTGGCGTTCTTCGCCGGCGGCCTCCACGGCCCCATAAGGCCTATTCTAATCCAGCAATGGGAGAATCAAGACAGCGACGTTCAAGTCCACAAATACCTCCCCAAGGACGTTTCTTACATCGACATGATGAGGAAGAGCAAGTTTTGCCTCTGCCCGAGCGGCTACGAAGTTGCTAGCCCTCGAATTGTCGAGGCCATTTACACCGGGTGCGTCCCGGTCCTCATTTCCGACCACTATATCCCTCCATTCAGCGACGTTATCAATTGGAAATCTTTCTCGGTCTCCGTCTCCGTCAAGGACATTCCCAATTTGAAGACGATTCTACAAGGGATATCGTCGCGCCAGTACCTGAGAATGTACCTTCGAGTGGTGAAGGTTAGGAGACACTTTGAAGTCCACTCTCCGCCTAAGAGATTTGATGTGTATCACATGATTCTTCATTCTGTGTGGCTTAGAAGACTCAATCTTAGGGTGCGCGACCGTTGA 1584 49.75 MKLPIFVIPLVAVSCLLAVLGPQFSSDWTSFFDNYASAWSSVSSPSETEDFRSNTTAAVNDSVSNHSVSSPFSSSPPPPPPPSSSWSSSSPPPPIDEKQSLPQLPNMTTVNAVLEETAINEGRNVSSEGNYEPAVVKSRKQREFTKLEKIEAGLRRARAAIKEAKFLNQTHDPDLVPNGPMYWNAKAFHRSYLEMEKELKIFVYEEGEPPLFHNGPCKSIYSTEGNFIHAIEMDTRFRTKDPDKAHVFFLPLSVAMLVQFVYVRDSHDFTPIRRTVIDYVNVIRTKYPFWNRTLGADHFMLSCHDWGPEASRSVPHLYKNSIRVLCNANTSEGFNPSKDISFPEINLQTGFLTGIIGGPSPSRRPILAFFAGGLHGPIRPILIQQWENQDSDVQVHKYLPKDVSYIDMMRKSKFCLCPSGYEVASPRIVEAIYTGCVPVLISDHYIPPFSDVINWKSFSVSVSVKDIPNLKTILQGISSRQYLRMYLRVVKVRRHFEVHSPPKRFDVYHMILHSVWLRRLNLRVRDR 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4128840 4131469 - CmaCh07G008770.1 Cma07g00877 298192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00877 527 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Cma07g00877 527 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 118 525 IPR004263 GO:0006486|GO:0016757
Cma07g00877 527 MobiDBLite consensus disorder prediction 72 99 - -
Cma07g00877 527 MobiDBLite consensus disorder prediction 62 102 - -
Cma07g00877 527 PANTHER EXOSTOSIN FAMILY PROTEIN 118 525 - -
Cma07g00877 527 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 216 487 - -
Cma07g00877 527 Pfam Exostosin family 196 475 IPR040911 -
Cma07g00877 527 Gene3D Glycogen Phosphorylase B; 361 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00375 Cma-Chr5:1658186 Cma07g00877 Cma-Chr7:4128840 1.61E-156 dispersed
Cma05g01270 Cma-Chr5:9694493 Cma07g00877 Cma-Chr7:4128840 6.44E-147 dispersed
Cma07g00877 Cma-Chr7:4128840 Cma10g00520 Cma-Chr10:2372807 2.49E-130 dispersed
Cma16g00740 Cma-Chr16:3926435 Cma07g00877 Cma-Chr7:4128840 4.36E-83 dispersed
Cma20g00518 Cma-Chr20:2502805 Cma07g00877 Cma-Chr7:4128840 8.76E-30 dispersed
Cma07g00877 Cma-Chr7:4128840 Cma09g01292 Cma-Chr9:8927228 7.93E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00877 - - csv:101205910 840.491