Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00879 AGGTATAGGAAATCACCTCAGTGTAGAAGCAACAAGTTTGGAGGTATAGGAAATCACCTCCGTGTAGAAGCAACAATCTTGGCATTAGCTTTGTTTTCTTCTGGTGAAAAGCTTTCGGTTTCTTACGATGGAAGAGCTCTCACGATTAATGGACAAAGAAAAATTATCGTCTCGGGTTCAATTCATTATCCTCGCAGCACTCCTGAGATGTGGCCACTTTTGATAGACAAGGCTAAACAAGGTGGCATTGACGCAATTGAAACCTATGTGTTTTGGAATGCACACGAGCCTCAACAAGGCCAATATGATTTTTCAGGAAATAATGATCTGGTCAGATTTATTCGGACAATTCAAGAACAAGGGCTGTATGCTATTCTCAGAATTGGACCATATGTTTGTGCCGAATGGAATTATGGTGGATTTCCTGTTTGGTTGCATAACATTCCAGGCATTGAGTTCAGGACCAAGAATAAAGTTTTCATGGATGAAATGGAAAAATTCTCCACATTGATAATAAATATGATGAAGGAGTATGAGTTATTTGCATCACAAGGAGGACCCATAATTATTGCTCAGATTGAAAACGAGTACGGTAACATAAAAGGATCATACGGACAAGCTGGAAATGAATATGTGAAGTGGTGTGCTGATCTGGCACTTTCTTACAACCTCAGCATTCCTTGGATCATGTGTCAAGAGGATGATGCTCCTCAGCCCATAATTAACACTTGCAATGGATTCTACTGTGACCAGTTCAAACCCAATAGCAAAAACAGTCCCAAAATGTGGACTGAGAATTGGACTGGCTGGTTCAAGGCTTGGGGTTCCAGAGATCCCTTGAGAACAGCCGAGGATCTTGCATTTGCTGTGGCACGTTTCTTCCAATATGGTGGAACCTTGCAAAATTACTACATGTATCATGGTGGAACGAACTTTGGTAGAACCTCGGGTGGTCCTTATATCACCACGTCGTATGATTACAATGCACCTCTCGATGAATATGGGAATACGGCCGAGCCAAAATGGGGACATTTGAAGCAACTTCATGATCTTGTGAAGTCTATGGAGGAAGTATTGACCTATGGTGAGGTCAATCACACCGAATACGGTCACTTGACAACAGGGAAATCAAGTTGCTTCTTTGGAAATGCAGAAAATGGTGACAGAGATATCACCTATGGGAACAGAACCTACAAAGTTCGTGGTTGGTCAGTCAGCATTCTTCCTGACTGCAAAACTGAAGTTTACAACACTGCTGAGGTAAACACTCAAACAACAATAAGGGAGAAGGTTTCAAGCCAGGTGGGAAACTTCAAAGAGCCAATGCAATGGCAATGGAGAGACGAGAAAATAGAATTCGTATCACGTGAAGGTGAAGTTACTGATTGTGCGATGACTGCCAATCGCCTTCTTGACCAAAAGGTTCTCACGAATGATTCTAGCGATTACCTGTGGTACATCACCAGCTTCCATCTTAGTGGATCTGATCCACTTTTCGGCAAGAATGTAACTCTGCGTGTTAAGACCAGTGGCCACATACTTCATGCATTCTTGAACGGGAGGCATATTGGATCACAACATGCTCAAAAGGACAAATATAGTTTCGTATTTGAGAAGAAAATCAGCGATCTATTGTATGGATTCAACCAAATTTCTCTACTAAGTGCCACAGTTGGATTGGCCAATTATGGAGCGCACTTTGAGAATTCTGAGGTAGGAGTTCATGGCCCAGTTGAATTGATTGCTGATGGAGAAACAATAAGGAATTTGTCAAGCAATGAGTGGTATTACAAGGTTGGTTTGGATGGTGAAAAGTCTGAGTTTTTCAATCCCAATTGTCAATTAAGGGAGCCCTGGAATTATGGCAATCTCCCATTGAATCAGAATTTCGTTTGGTATAAGACCACTTTTCAAACTCCAAGCGGAAGTGAAGCCGTGATAGTGGATTTGATGGGCATGGGGAAGGGTCATGCTTGGGTTAATGGACTAAGCATTGGAAGGTATTGGCCAAGTTATCTTTCAATTGAGAATGGCTGCTCTTCAAGTTGTGACTTCCGTGGGGCTTACTCTGATGGCAAGTGTGCCACTAACTGTGGAAAGCCTACTCAAAGATGGTACCATATCCCAAGATCTTACCTGAATTGTGAAGGAGAGAACACACTGATTTTATTCGAAGAGTTTGGTGGGATGCCATTGGATATAGATATCCAAACAACGAGGGTGAAAAAGGTATGTGCAATGCCTTATGCAGGAAGCACGTTGGAGCTATCGTGCCATGATCGAACCATCTCTGATATCAAGTTTGTGAGCTTTGGGAACCCCCATGGCACTTGTGACAGTTTCCAGAAGGGTTCCTGCGAGTCCTCCACTGCCTTATCGGTCATCGAGGAGGCATGTGTTGGACAAAGGGAATGCTCCATTGAAGTTTCGGAAAAGAATCTTGGACCAACTGGTTGCAAGAAACCTAATCGCCTCGCTGTTCAAGTTACTTGTTAG 2496 42.75 RYRKSPQCRSNKFGGIGNHLRVEATILALALFSSGEKLSVSYDGRALTINGQRKIIVSGSIHYPRSTPEMWPLLIDKAKQGGIDAIETYVFWNAHEPQQGQYDFSGNNDLVRFIRTIQEQGLYAILRIGPYVCAEWNYGGFPVWLHNIPGIEFRTKNKVFMDEMEKFSTLIINMMKEYELFASQGGPIIIAQIENEYGNIKGSYGQAGNEYVKWCADLALSYNLSIPWIMCQEDDAPQPIINTCNGFYCDQFKPNSKNSPKMWTENWTGWFKAWGSRDPLRTAEDLAFAVARFFQYGGTLQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGNTAEPKWGHLKQLHDLVKSMEEVLTYGEVNHTEYGHLTTGKSSCFFGNAENGDRDITYGNRTYKVRGWSVSILPDCKTEVYNTAEVNTQTTIREKVSSQVGNFKEPMQWQWRDEKIEFVSREGEVTDCAMTANRLLDQKVLTNDSSDYLWYITSFHLSGSDPLFGKNVTLRVKTSGHILHAFLNGRHIGSQHAQKDKYSFVFEKKISDLLYGFNQISLLSATVGLANYGAHFENSEVGVHGPVELIADGETIRNLSSNEWYYKVGLDGEKSEFFNPNCQLREPWNYGNLPLNQNFVWYKTTFQTPSGSEAVIVDLMGMGKGHAWVNGLSIGRYWPSYLSIENGCSSSCDFRGAYSDGKCATNCGKPTQRWYHIPRSYLNCEGENTLILFEEFGGMPLDIDIQTTRVKKVCAMPYAGSTLELSCHDRTISDIKFVSFGNPHGTCDSFQKGSCESSTALSVIEEACVGQRECSIEVSEKNLGPTGCKKPNRLAVQVTC 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4143984 4148237 + CmaCh07G008790.1 Cma07g00879 298194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00879 831 Pfam Galactose binding lectin domain 756 831 IPR000922 GO:0030246
Cma07g00879 831 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 185 197 IPR019801 GO:0004553|GO:0005975
Cma07g00879 831 PANTHER BETA-GALACTOSIDASE RELATED 26 821 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 ProSiteProfiles SUEL-type lectin domain profile. 748 831 IPR000922 GO:0030246
Cma07g00879 831 SUPERFAMILY (Trans)glycosidases 39 355 IPR017853 -
Cma07g00879 831 Gene3D - 732 831 IPR043159 -
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 71 89 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 126 145 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 183 198 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 319 335 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 299 314 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 655 671 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 50 67 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 262 277 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 PRINTS Glycosyl hydrolase family 35 signature 628 642 IPR001944 GO:0004553|GO:0005975
Cma07g00879 831 Pfam Beta-sandwich domain in beta galactosidase 351 421 IPR041392 -
Cma07g00879 831 Gene3D - 604 680 - -
Cma07g00879 831 Pfam Glycosyl hydrolases family 35 47 350 IPR031330 -
Cma07g00879 831 SUPERFAMILY Galactose-binding domain-like 405 582 IPR008979 -
Cma07g00879 831 PANTHER BETA-GALACTOSIDASE 26 821 - -
Cma07g00879 831 Gene3D Glycosidases 37 356 - -
Cma07g00879 831 SUPERFAMILY Galactose-binding domain-like 593 737 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00879 Cma-Chr7:4143984 Cma11g00750 Cma-Chr11:3643598 0 dispersed
Cma11g00947 Cma-Chr11:4980622 Cma07g00879 Cma-Chr7:4143984 3.59E-110 dispersed
Cma18g01229 Cma-Chr18:9669336 Cma07g00879 Cma-Chr7:4143984 5.20E-44 dispersed
Cma07g00878 Cma-Chr7:4132423 Cma07g00879 Cma-Chr7:4143984 2.38E-93 tandem
Cma07g00879 Cma-Chr7:4143984 Cma07g00880 Cma-Chr7:4154715 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00879 - - cpep:111781657 1515.75