Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00884 ATGCGCCTCTTCTTTTGCCTCATCTCCTTCTTACTCTCCTTCTTCCTCACCGGCACGGTCCCCGTCTCCGCCGCTGCCTTCTCCGCCCACCATTTCCCTCTCCACAGAGCCTTGCCCCACTCTCCCACTCCCCATTTTTATTCCCTCAGAGCTCGCGACCGTCTCCGCCATTCCCGCGTCTTGCGCCGATTGCGTGGTGGCATCGTCGACTTCTCCGTTAAAGGCTCCTCCGATCAATTCGTTGGGCTTTATTACACCAAAGTGAAGTTGGGAAATCCGCAGAGGGAATTCAACGTGCAGATCGATACTGGGAGTGACATTTTGTGGGTTAATTGCAGTCCTTGCGATGGTTGTCCCCAATCAAGCGGACTTGGAATCGAACTCAACTTGTTTGATACTGCAATGTCGTCATCTGCTAGGCTTGTTTCCTGCTCTGATCCGATATGTTCTGCAGTTCCGACCACCGCTAATCAATGCTTATCCCAGAATGACAATTGCAATTACACCTTCCAGTATCGAGATAGAAGTGCGACGTCGGGCTTTTATGTTACTGATTCAATGTATTTTGATATGATTCTTGGGGAGTCTGTGATTGCAAACTCTTCAGCCGCTATTGTTTTTGGGTGTAGCATATATCAGTATGGGGATTTGACTCGAACAACCGTAGCACTTGATGGAATTTTTGGATTTGGTCGAGGGGAGTTTTCAGTTATATCACAATTATCGTCTCGAGGGATAACACCTAAAGTTTTCTCTCACTGTTTGAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACCTTAAATCTACAGAGTATTGCAATCAGCGGGCAACCATTTCCAAATCCCACAGTGTTTTCAATATCAAGTGCAGGAGGAACTATTATTGACTCCGGAACAACTTTAGCATATCTTGTGGAAGAAGTTTACAACTGGATTGTCTCTGTATCTCGACAAGTATTTCCTGTGATCAGCTTTAAATTTGAGGGTATTGCATCCATGGTGTTGAAACCTGAAGAATATCTTCAGTTTGACTCCATAGAACCTGCTTTACGGTGCATCGGTTTTCAGAAAGCCGAGGATGGAATAAATATTTTAGGAGATCTTGTTTTGAAAGATAAGATCGTTGTCTATGACTTAGCTCGACAACGGGTCGGATGGGCCAATTATGACTGTTCGTCGTCTGTAAATGTTTCTGTAACGTCCGGGAAGGACGTGTTCATCGATGGACAGCTGAGTTCCAATAACTCTGTGGATTCCCCTGTCTTCATTATTTGTGCTAGCCGCCTTCACCTGGCCAATCTGTATTTTGAATGCTTGGTCGGGTTGGTTATCACCCAAGCTCGAAGAGCAAATGTTTGTGCACCTCCTGCATCTTTCATCTGGCTAAATGCAGGCATCCTTTTCTTCAAGCTCGTCGTTCTGCTGCGACCCACAATGAGGTCCTGCTATTATAAGTTGAAAGCTGTAGGTTTTGAAATTTTAGTTTGA 1554 45.5 MRLFFCLISFLLSFFLTGTVPVSAAAFSAHHFPLHRALPHSPTPHFYSLRARDRLRHSRVLRRLRGGIVDFSVKGSSDQFVGLYYTKVKLGNPQREFNVQIDTGSDILWVNCSPCDGCPQSSGLGIELNLFDTAMSSSARLVSCSDPICSAVPTTANQCLSQNDNCNYTFQYRDRSATSGFYVTDSMYFDMILGESVIANSSAAIVFGCSIYQYGDLTRTTVALDGIFGFGRGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIAISGQPFPNPTVFSISSAGGTIIDSGTTLAYLVEEVYNWIVSVSRQVFPVISFKFEGIASMVLKPEEYLQFDSIEPALRCIGFQKAEDGINILGDLVLKDKIVVYDLARQRVGWANYDCSSSVNVSVTSGKDVFIDGQLSSNNSVDSPVFIICASRLHLANLYFECLVGLVITQARRANVCAPPASFIWLNAGILFFKLVVLLRPTMRSCYYKLKAVGFEILV 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4171047 4175925 - CmaCh07G008840.1 Cma07g00884 298199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00884 517 Gene3D Acid Proteases 269 338 IPR021109 -
Cma07g00884 517 Pfam Xylanase inhibitor N-terminal 84 268 IPR032861 -
Cma07g00884 517 PANTHER ASPARTYL PROTEASES 337 432 IPR001461 GO:0004190|GO:0006508
Cma07g00884 517 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 16 335 - -
Cma07g00884 517 PANTHER ASPARTYL PROTEASES 16 335 IPR001461 GO:0004190|GO:0006508
Cma07g00884 517 SUPERFAMILY Acid proteases 79 417 IPR021109 -
Cma07g00884 517 Gene3D Acid Proteases 339 420 IPR021109 -
Cma07g00884 517 CDD pepsin_A_like_plant 84 413 IPR034161 -
Cma07g00884 517 Gene3D Acid Proteases 69 268 IPR021109 -
Cma07g00884 517 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 337 432 - -
Cma07g00884 517 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Cma07g00884 517 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Cma07g00884 517 PRINTS Pepsin (A1) aspartic protease family signature 385 400 IPR001461 GO:0004190|GO:0006508
Cma07g00884 517 ProSiteProfiles Peptidase family A1 domain profile. 84 409 IPR033121 -
Cma07g00884 517 Pfam Xylanase inhibitor C-terminal 340 409 IPR032799 -
Cma07g00884 517 Pfam Xylanase inhibitor C-terminal 286 336 IPR032799 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00425 Cma07g00884 CCT
Cma06g00425 Cma07g00884 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00884 Cma-Chr7:4171047 Cma08g00078 Cma-Chr8:406155 4.99E-80 dispersed
Cma14g00253 Cma-Chr14:1102157 Cma07g00884 Cma-Chr7:4171047 3.69E-173 wgd
Cma02g01366 Cma-Chr2:7970258 Cma07g00884 Cma-Chr7:4171047 5.81E-157 wgd
Cma20g00538 Cma-Chr20:2593032 Cma07g00884 Cma-Chr7:4171047 5.47E-136 wgd
Cma06g00425 Cma-Chr6:1954931 Cma07g00884 Cma-Chr7:4171047 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00884 - - csv:101205203 659.833