Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00885 ATGTCTTCCATTCTTTGTTATCCCTCACTCACTTCTCCGTCATTTCCCCTCCATAAACGAATCCCTCTCCGGCGAAGAACCCAATTTCCATTTCTCTCCATTAAATCCTCCATCGACGAAAGGGATCCCCCAACGCCGGCGAAGCTCAACAACTCAACCAACACTTCAAAATCCGGTTCCTGGGTCAGCCCAGATTGGCTCACTTCTCTGACTCGCTACATTACCCTAGGTCAGGGCGATGACTCCGGCATTCCCATAGCCAGTGCGAAGCTCGATGACGTTTCTGATCTGCTCGGCGGTGCTCTTTTTCTTCCGCTTTTCAAGTGGATGAATGACTATGGACCTATTTACAGGCTCGCCGCTGGGCCTAGGAATTTCGTTGTGGTTAGTGACCCTGCCATTGCTAAGCATGTTCTTAGGAATTATGGGACTTACGCTAAAGGGCTTGTTTCTGAGGTCTCCGAGTTCTTGTTTGGGTCGGGTTTTGCGATTGCTGAAGGCCCGCTTTGGACGGTTCGCCGTAGGGCTGTGGTTCCATCTCTTCACAAGAAGTACTTATCCGTTATTGTCGATCGAGTATTCTGTAAATGTGCCATGAGATTGGTGGAGAAGCTGCAAGAGGATGCATTAAATAATAATTCAGTTAACATGGAGGAAAAGTTTTCTCAATTAACTCTTGATGTTATTGGTCTATCTGTATTCAACTACAGTTTTGATTCTCTCACTACTGACAGCCCTGTGATTGATGCAATTAAGGCTCTGTGTAAGATAATCCCAAGACAGATAAAAGCCGAAGAAGCAGTTACAGTGATCCGAAGAACTGTTGAAGATCTAATTGCCAAGTGCAAAGCAATTGTGGAAACGGAGGGTGAGCGTATTGATGAGGAGGAATATGTGAATGATGCTGATCCAAGTATCCTTCGTTTCCTGCTGGCCAGTAGACAAGAGGTTTCAAGTGTACAATTACGAGATGATCTATTGTCGATGTTGGTTGCTGGACATGAAACTACCGGTTCTGTTCTAACATGGACATTGTATCTTTTAAGTAAGGCGCAAACTGAAGTTGATAGAGTCTTACAAGGAAGGCCTCCTTCCTACAAAGATACAAAGGAACTTAAATTTTTGACCCGTTGTATCCTTGAGTCAATGCGCCTTTACCCACATCCACCTGTTTTAATAAGAAGAGCTCAAGTTGCTGACGTGCTTCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATCATGATTTCAGTATATAACATCCATCGCTCGTCCCAGGTTTGGGAACGAGCAGAAGAGTTTATACCAGAAAGATTTGACTTGGATGGTCCCGTGCCCAACGAAAGCAATACAGATTTCAGTGGAGGACCCCGAAAGTGTGTTGGCGATCAATTCGCCCTGCTTGAAGCTATAGTTGCACTTGCCATTTTTCTGCAGCATATGAACTTCGAGCTGGTTCCAGATCAGACCATTGGGATGACTACTGGAGCAACTATACATACAACAAATGGTTTGTACATGAAACTCAGCCAAAAGCAGATGACCCCAAGATTAGCTACCCCTGCTTCAAGCTTAGCATCAACGGAGATGAGTTGGTATAGTATCATGGGGTGTGGGGAAAAGGGGATACCAATGCCAAAAGCATATCCCTTGGAAGATGCTGAAAATTGCAGCCTTTTCTTGAACAACAAGTGGCCACAAACTCCCTTAGATAATTTCTTCCTTTTCTATTGCCTTGATAAACAAACCACATCCCTGATCATCAACCCCTCTCAAACTTGCACGAACCCCACCGCCCCTGATGGCGGTGGCCGGAGAAGGAAGTCAGGGTGGCTGCTGATGGCTTCTTTCCATGGCGATGCCTCTGCTGCTGCTGCAGGTCAGATCGGGATAGAATGA 1899 45.6 MSSILCYPSLTSPSFPLHKRIPLRRRTQFPFLSIKSSIDERDPPTPAKLNNSTNTSKSGSWVSPDWLTSLTRYITLGQGDDSGIPIASAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTYAKGLVSEVSEFLFGSGFAIAEGPLWTVRRRAVVPSLHKKYLSVIVDRVFCKCAMRLVEKLQEDALNNNSVNMEEKFSQLTLDVIGLSVFNYSFDSLTTDSPVIDAIKALCKIIPRQIKAEEAVTVIRRTVEDLIAKCKAIVETEGERIDEEEYVNDADPSILRFLLASRQEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKAQTEVDRVLQGRPPSYKDTKELKFLTRCILESMRLYPHPPVLIRRAQVADVLPGNYKVNAGQDIMISVYNIHRSSQVWERAEEFIPERFDLDGPVPNESNTDFSGGPRKCVGDQFALLEAIVALAIFLQHMNFELVPDQTIGMTTGATIHTTNGLYMKLSQKQMTPRLATPASSLASTEMSWYSIMGCGEKGIPMPKAYPLEDAENCSLFLNNKWPQTPLDNFFLFYCLDKQTTSLIINPSQTCTNPTAPDGGGRRRKSGWLLMASFHGDASAAAAGQIGIE 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4177829 4185454 + CmaCh07G008850.1 Cma07g00885 298200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00885 632 Pfam Cytochrome P450 106 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 MobiDBLite consensus disorder prediction 37 61 - -
Cma07g00885 632 MobiDBLite consensus disorder prediction 46 61 - -
Cma07g00885 632 Gene3D Cytochrome P450 85 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PANTHER CAROTENE EPSILON-MONOOXYGENASE, CHLOROPLASTIC 122 511 - -
Cma07g00885 632 PRINTS E-class P450 group I signature 110 129 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma07g00885 632 PANTHER CYTOCHROME P450 FAMILY 4 122 511 - -
Cma07g00885 632 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Cma07g00885 632 SUPERFAMILY Cytochrome P450 98 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00885 Cma-Chr7:4177829 Cma10g00756 Cma-Chr10:3444531 4.48E-36 dispersed
Cma04g00608 Cma-Chr4:3093283 Cma07g00885 Cma-Chr7:4177829 1.64E-109 transposed
Cma16g00734 Cma-Chr16:3867166 Cma07g00885 Cma-Chr7:4177829 1.63E-142 transposed
Cma03g01189 Cma-Chr3:7937824 Cma07g00885 Cma-Chr7:4177829 6.83E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00885 K09837 - csv:101204961 915.605