Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00892 ATGGTGGCTGCAATCTGTATTGTGCTGCTAGCTTTGCTGCTACACTCCCTCTCGCCGCCATGCACCGCTCTCAACCTCACCCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGATTCCATGACAAGAAGGCAACTGATCCAAAACTCAGAGAACGACGAATCTTCTTCCTGCTACACCGGAAACCCCATCGACGACTGCTGGAAATGCGATTCAAATTGGCCAAACAACCGCCAACGCCTCGCCGATTGCGCCATAGGATTTGGCCAGTACGCTTTAGGAGGGAAGAACGGTGAGTTCTACGTCGTCACAGATGATTCCGACGATGATCCAGTCAATCCAGAGCCCGGGACATTACGATACGCCGTTATACAGCCACAGCCTCTCTGGATCGTCTTCCCCGCCAATATGCTCATCAAACTCTCACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAACGTCCACATCGTCGGCGGCGGTTGCATCACCTTGCAATACATAAGTAACATCATCATCCACAATATCCACATCCACCATTGTTATCCATCAGGGAACACCATGGTCCGATCAAGTCCGACGCATTACGGATACCGTACGAAATCGGACGGCGACGGGATCTCGATCTTCGGGTCTAAGGACATATGGATTGACCATTGTTCACTCTCGCATTGCAAGGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGTTACTAGGTCACAGTGACAGCTACTCGCCGGACTCCGGAATGCAGGTAACAATAGCATTCAACCACTTCGGCGAGAAGCTTGTGCAAAGGATGCCACGGTGCCGGCGAGGCTACATCCACGTGGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGAGGCAGCGGGAACCCCACAATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTAACCAAGCGTGTAGAGACCGCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCTGACGGCGACATCCTCGTCAACGGCGCCTTCTTCATCACTTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAGCCCAAGTCCGCCGCCCTAATCGACCAGCTCACTTGGCACGCCGGTCCACTCGGCGTCGGCAGTAGGGACAACAATTTGGGCATGTGGACCACTGGCTCTAATGGTGGTGGTGGCTATGTTCTTGGGTCTGGCCCGGATTACACTGACGACATGTCGGAAAGCCTCTGGCGGATTCGGTTTCGATATTTTGTTATGGTATTTTCTTTCTGTGCATTGGCACTTGCCTTTGTGCCATGA 1419 53.77 MVAAICIVLLALLLHSLSPPCTALNLTLPGQHPSPELVAQEVHRKVNDSMTRRQLIQNSENDESSSCYTGNPIDDCWKCDSNWPNNRQRLADCAIGFGQYALGGKNGEFYVVTDDSDDDPVNPEPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNIIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYSPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETAESEWRGWNWRSDGDILVNGAFFITSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGSRDNNLGMWTTGSNGGGGYVLGSGPDYTDDMSESLWRIRFRYFVMVFSFCALALAFVP 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4221789 4224174 - CmaCh07G008920.1 Cma07g00892 298207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00892 472 Gene3D - 70 412 IPR012334 -
Cma07g00892 472 PANTHER PECTATE LYASE 18-RELATED 2 430 IPR045032 GO:0030570
Cma07g00892 472 PANTHER PECTATE LYASE 12-RELATED 2 430 - -
Cma07g00892 472 SMART amb_all 145 342 IPR002022 -
Cma07g00892 472 SUPERFAMILY Pectin lyase-like 65 394 IPR011050 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Cma07g00892 472 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Cma07g00892 472 Pfam Pectate lyase 155 334 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01392 Cma-Chr4:7107387 Cma07g00892 Cma-Chr7:4221789 0 dispersed
Cma07g00892 Cma-Chr7:4221789 Cma15g00500 Cma-Chr15:2246288 0 dispersed
Cma18g00911 Cma-Chr18:7813567 Cma07g00892 Cma-Chr7:4221789 0 wgd
Cma03g01203 Cma-Chr3:8019595 Cma07g00892 Cma-Chr7:4221789 0 wgd
Cma04g02549 Cma-Chr4:17458857 Cma07g00892 Cma-Chr7:4221789 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00892 K01728 - csv:101203012 829.32