Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00912 ATGGCCGATGCAAAGACCATATGCAAGAGCCCCACACATCATGACCCACTAAACTGGGGCGTGGCGGCCGAGTCCCTTAAGGGAAGCCATCTTAATGAGGTGAAGCGCATGGTGGAAGAGTACCAGAGCCCCCTTGTCAAGCTCGATGGTGAAACCCTCACTATCTCCCAAGTGGCTGCTATTGCTACAAGGCACTCCCATGTTGCTGTGGAGCTTTCAGAGTCTACTAGAGCTGGCGTTATGGCTAGTAGTGATTGGATTATGGAGAGCCTGAAGAAAGGCACGGATAGTTATGGAGTCACTACTGGCTTTGGTGCTAACTCTCATAGAAGGACCCAACAAGGTGGAGACCTTCAAAAGGAGCTTATTCGATTTTTGAATGCTGGGATCTTTGGAGAAGAGGCTGAGTCGAGCCATGCTTTGTCTCACTCCGCTACAAGAGCGGCCATGTTAGTGAGAGTCAACACTCTTCTTCAAGGCTACTCGGGCGTTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACGTAACTCCATGCTTGCCTCTTCGTGGAACCGTTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACCTTGCTGGACTGCTCACTGGTCGGCCGAACTCAAAAGCTATTGGTCCGAATGGAGAGAGTTTTGGTGCAAAGGAAGCTTTTCAAAAAGCTCTTATTCCTTCTGGGTTCTTTGAGTTCCAACCTAAAGAAGGTTTTGCTATTGTCAATAGTACTGCTGTTGGCTCTGGGCTGGCTTCGATTGTTCTGTTTGATGCCAATATTTTGGCTGTTTTGTCTGAGATTTTGTCGGCCATTTTTACTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACGCACAAATTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATCATGGAACACATCTTGGATGGAAGTTCTTACATGAAAACTGCAAAGAAATTGCATGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTGATTCGATACTCAACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAGGGCTCTGAATGGAGGCAACTTTCAAGGAACACCAATTGGAGTCTCCATGGACAACACTCGATTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCAGAGCTTGTCAATGATTTCTACAATAATGGGCTACCTTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTAGATTATGGATTTAAAGGTGCTGAAGTTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAACTCACGTACAGAGCGCTGAACAGCACAACCAAGATGTTAACTCTCTTGGTTTAATCTCTTCAAGAAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCATCAACATTTTTGGTTGCACTCTGTCAAGCAATCGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACTGTTAAAAACACCGTAAGCCTGGTAGCTAAGAAAGTGTTGCCATCGCCAAGATTATGGGAGAAAGAGTTACTGAAGGCTGTCGATAGAGAGTACACTTTTGGTTATATAGATGACCCATGTAGTGCTACTTACCCATTGATGGAGAAATTGAGACAAGTTATTGTGGAGCATGCTCTCACAAATGATGATGATGAGAAGAACGAGAACACTTCAATCTTACAAAAGATCGCTTCTTTCGAAGAGGCATTGAGGGCAATTTTACCAAAAGAAGTTGAGAAGACAAGACTTGCATATGAGAGTGGAAATGCAGAGATTAAGAACCCGATTGAGGAATGCAGGTCTTATCCGTTGTATAGGTTTGTAAGAGAAGAATTGGACACAAAATTACTGACGGGTGAAAAAGTGATATCTCCCGGAGAGATGTGTGAAAAAGTATTCACAGCTTTGCGTAAAGGGAAGATGCTTGATTCTATGTTAGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATACGTTAG 2097 43.63 MADAKTICKSPTHHDPLNWGVAAESLKGSHLNEVKRMVEEYQSPLVKLDGETLTISQVAAIATRHSHVAVELSESTRAGVMASSDWIMESLKKGTDSYGVTTGFGANSHRRTQQGGDLQKELIRFLNAGIFGEEAESSHALSHSATRAAMLVRVNTLLQGYSGVRFEILEAITKLLNHNVTPCLPLRGTVTASGDLVPLSYLAGLLTGRPNSKAIGPNGESFGAKEAFQKALIPSGFFEFQPKEGFAIVNSTAVGSGLASIVLFDANILAVLSEILSAIFTEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRYSTKSIEREINSVNDNPLIDVSRNRALNGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEVAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSLVAKKVLPSPRLWEKELLKAVDREYTFGYIDDPCSATYPLMEKLRQVIVEHALTNDDDEKNENTSILQKIASFEEALRAILPKEVEKTRLAYESGNAEIKNPIEECRSYPLYRFVREELDTKLLTGEKVISPGEMCEKVFTALRKGKMLDSMLECLKEWNGAPIPIR 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4328216 4330312 + CmaCh07G009120.1 Cma07g00912 298227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00912 698 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 188 204 IPR022313 GO:0016841
Cma07g00912 698 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 10 697 - -
Cma07g00912 698 Gene3D - 7 252 IPR024083 -
Cma07g00912 698 PANTHER HISTIDINE AMMONIA-LYASE 10 697 IPR001106 -
Cma07g00912 698 Gene3D - 519 632 IPR023144 -
Cma07g00912 698 SUPERFAMILY L-aspartase-like 15 697 IPR008948 GO:0003824
Cma07g00912 698 Pfam Aromatic amino acid lyase 53 527 IPR001106 -
Cma07g00912 698 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 15 688 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cma07g00912 698 CDD PAL-HAL 51 516 IPR001106 -
Cma07g00912 698 Gene3D Fumarase/aspartase (Central domain) 253 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00912 Cma-Chr7:4328216 Cma07g00918 Cma-Chr7:4366313 0 dispersed
Cma07g00912 Cma-Chr7:4328216 Cma07g00913 Cma-Chr7:4331588 0 tandem
Cma18g00896 Cma-Chr18:7744795 Cma07g00912 Cma-Chr7:4328216 0 wgd
Cma20g00497 Cma-Chr20:2435852 Cma07g00912 Cma-Chr7:4328216 0 wgd
Cma03g01229 Cma-Chr3:8135610 Cma07g00912 Cma-Chr7:4328216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00912 K10775 - csv:101218856 1185.63