Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00916 ATGGCAGCCATTCAGAAGATTGAAGATAGCTTGTGCCACACCCGAAATGATCCACTCAACTGGGGTGTGGCTGCCGAGTCTCTCAAGGGGAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTCGGTGGTGAAACTCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAACCATGTGATGGTCCAACTGGCCGAGTCTGCTAGAGCGGGCGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGCTATGGTGTCACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGCGCTCTTCAGAAGGAGCTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACTCTGCCCCACTCCGCTACCAGGGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTATTCGGGCATTCGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAATTCTAACATCACTCCCTGCTTGCCTCTTCGTGGAACCATCACTGCTTCGGGTGATCTTGTTCCTCTTTCTTATATTGCTGGATTGCTCACCGGCCGACCCAACTCTAAGGCGGTTGGACCAAATGGAGAGAGCCTTAATGCTCAGGAGGCTTTTCGACAAGCTGATATTCCTTCTGGGTTCTTCGAGCTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCGATTGTTCTGTTTGAGGCCAACATCTTGGCTGTTTTGTCTGAGATTTTGTCCGCAATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAACACATCTTGGACGGAAGTTCTTACATGAAAACTGCAAAGAAATTGCACGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATCGAAGTTATTCGATTCTCAACCAAATCTATCGAAAGAGAGATTAACTCGGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCATCCATGGAGGCAACTTCCAAGGAACTCCCATTGGAGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTTCTACAACAATGGGCTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTAGATTATGGATTCAAAGGTGCAGAGATTGCGATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACGAGTCATGTACAGAGCGCCGAGCAACACAACCAAGATGTTAACTCGCTGGGTTTAATCTCTTCAAGGAAAACAGCGGAAGCCCTTGATATCTTAAAACTCATGTCTTCCACCTTTTTGGTTGCCCTCTGCCAAGCAATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAACGCAGTAAAAAGCTGTGTTAGCCAAACAGCCAAGAAAGTGTTGACCACATCCTCTAATGGAGCGCTTCACCCATCAAGGTTTTGTGAGAAGGATCTTCTAAAGGTTGTGGACAGAGAGTACACCTTCGCTTATATCGATGATCCATGCAGTGCCACTTACCCATTGAGCCAAAAGTTGAGGCAAGTCCTTGTTGAGCACGCACTTGGCAATGGTGATTGTGAAAAGGACGCAGACACTTCAATCTTCCAAAAGATTGGGGCTTTCGAGGAGGAACTAAAGGCAGTGTTACCAAAAGAAGTCGAAAATGCAAGGTCGTGGTACGAGAGTGGAAATTCCAAAATTGAGAATCAGATAAAGGACTGCAGATCTTATCCATTGTATAGGTTTGTGAGAGAAGAGTTGGGAACGAATCTACTGACAGGAGAAAAAGTCATGTCTCCGGGAGAAGAGTGCGAGAAGGTGTTCACAGCTCTGTGTGAAGGGAAGATGATCGACTCTATCTTGGAGTGCTTGAAAGAGTGGAACGGTGCTCCAATTCCCATCTGCTAA 2127 47.01 MAAIQKIEDSLCHTRNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNHVMVQLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLNAQEAFRQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEENLKNAVKSCVSQTAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALGNGDCEKDADTSIFQKIGAFEEELKAVLPKEVENARSWYESGNSKIENQIKDCRSYPLYRFVREELGTNLLTGEKVMSPGEECEKVFTALCEGKMIDSILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4346372 4348498 + CmaCh07G009160.1 Cma07g00916 298231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00916 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Cma07g00916 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 708 - -
Cma07g00916 708 CDD PAL-HAL 53 518 IPR001106 -
Cma07g00916 708 Gene3D - 9 254 IPR024083 -
Cma07g00916 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841
Cma07g00916 708 Gene3D - 521 642 IPR023144 -
Cma07g00916 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824
Cma07g00916 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 -
Cma07g00916 708 Pfam Aromatic amino acid lyase 55 527 IPR001106 -
Cma07g00916 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00916 Cma-Chr7:4346372 Cma07g00918 Cma-Chr7:4366313 0 dispersed
Cma07g00915 Cma-Chr7:4339661 Cma07g00916 Cma-Chr7:4346372 7.94E-179 tandem
Cma07g00916 Cma-Chr7:4346372 Cma07g00917 Cma-Chr7:4358132 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00916 K10775 - csv:101218617 1296.18