Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00918 ATGGCCCCCGCTCCCTTCCAACAACTTGCCCCCCAAAATGGTTCCGTGGAGAGCTTCTGCATTAGCACTACTGATCCACTCAACTGGGGTGTGGCTGCCGAGGCTCTCAAGGGGAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTCGGTGGTGAAACTCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAACCATGTGGTGGTCGAACTGGCCGAGTCTGCTAGAGCGGGCGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGCTATGGTGTCACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGCGCTCTTCAGAAGGAGCTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACTCTGCCCCACTCCGCTACCAGGGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTATTCGGGCATTCGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAATTCTAACATCACTCCCTGCTTGCCTCTTCGTGGAACCATCACTGCTTCGGGTGATCTTGTTCCTCTTTCTTATATTGCTGGATTGCTCACCGGCCGACCCAACTCTAAGGCGGTTGGACCAAATGGAGAGAGCCTTAATGCTCAGGAGGCTTTTCGACAAGCTGATATTCCTTCTGGGTTCTTCGAGCTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCCATTGTTCTGTTTGAGGCCAACATCTTGGCTGTTTTGTCTGAGATTTTGTCCGCAATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAACACATCTTGGACGGAAGTTCTTACATGAAAACTGCAAAGAAATTGCACGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATCGAAGTTATTCGATTCTCAACCAAATCTATCGAAAGAGAGATTAACTCGGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCATCCATGGAGGCAACTTCCAAGGAACTCCCATTGGAGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTTCTACAACAATGGGCTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTAGATTATGGATTCAAAGGTGCAGAGATTGCGATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACGAGTCATGTACAGAGCGCCGAGCAACACAACCAAGATGTTAACTCGCTGGGTTTAATCTCTTCAAGGAAAACAGCGGAAGCCCTTGATATCTTAAAACTCATGTCTTCCACCTTTTTGGTTGCCCTCTGCCAAGCAATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAACGCAGTAAAAAGCTGTGTTAGCCAAACAGCCAAGAAAGTGTTGACCACATCCTCTAATGGAGCGCTTCACCCATCAAGGTTTTGTGAGAAGGATCTTCTAAAGGTTGTGGACAGAGAGTACACCTTCGCTTATATCGATGATCCATGCAGTGCCACTTACCCATTGAGCCAAAAGTTGAGGCAAGTCCTTGTTGAGCACGCACTTGGCAATGGTGATTGTGAAAAGGACGCAGACACTTCAATCTTCCAAAAGATTGGGGCTTTCGAGGAGGAACTAAAGGCAGTGTTACCAAAAGAAGTCGAAAATGCAAGGTCGTGGTACGAGAGTGGAAATTCCAAAATTGAGAATCAGATAAAGGACTGCAGATCTTATCCATTGTATAGGTTTGTGAGAGAAGAGTTGGGAACGAATCTACTGACAGGAGAAAAAGTCATGTCTCCGGGAGAAGAGTGCGAGAAGGTGTTCACAGCTCTGTGTGAAGGGAAGATGATCGACTCTATCTTGGAGTGCTTGAAAGAGTGGAACGGTGCTCCAATTCCCATCTGCTAA 2151 47.42 MAPAPFQQLAPQNGSVESFCISTTDPLNWGVAAEALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNHVVVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLNAQEAFRQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEENLKNAVKSCVSQTAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALGNGDCEKDADTSIFQKIGAFEEELKAVLPKEVENARSWYESGNSKIENQIKDCRSYPLYRFVREELGTNLLTGEKVMSPGEECEKVFTALCEGKMIDSILECLKEWNGAPIPIC 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4366313 4368463 - CmaCh07G009180.1 Cma07g00918 298233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00918 716 Gene3D - 529 650 IPR023144 -
Cma07g00918 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Cma07g00918 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824
Cma07g00918 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Cma07g00918 716 PANTHER HISTIDINE AMMONIA-LYASE 22 716 IPR001106 -
Cma07g00918 716 CDD PAL-HAL 61 526 IPR001106 -
Cma07g00918 716 Pfam Aromatic amino acid lyase 63 535 IPR001106 -
Cma07g00918 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 22 716 - -
Cma07g00918 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cma07g00918 716 Gene3D - 17 262 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01229 Cma-Chr3:8135610 Cma07g00918 Cma-Chr7:4366313 0 dispersed
Cma07g00912 Cma-Chr7:4328216 Cma07g00918 Cma-Chr7:4366313 0 dispersed
Cma07g00916 Cma-Chr7:4346372 Cma07g00918 Cma-Chr7:4366313 0 dispersed
Cma07g00918 Cma-Chr7:4366313 Cma07g00920 Cma-Chr7:4385994 0 dispersed
Cma07g00917 Cma-Chr7:4358132 Cma07g00918 Cma-Chr7:4366313 0 tandem
Cma07g00918 Cma-Chr7:4366313 Cma07g00919 Cma-Chr7:4376824 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00918 K10775 - csv:101218617 1310.05