Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00919 ATGGAGAGCATGAACAAAGGCACTGATAGCTATGGTGTCACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGCGCTCTTCAGAAGGAGCTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACTCTGCCCCACTCCGCTACCAGGGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTATTCGGGCATTCGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAATTCTAACATCACTCCCTGCTTGCCTCTTCGTGGAACCATCACTGCTTCGGGTGATCTTGTTCCTCTTTCTTATATTGCTGGATTGCTCACCGGCCGACCCAACTCTAAGGCGGTTGGACCAAATGGAGAGAGCCTTAATGCTCAGGAGGCTTTTCGACAAGCTGATATTCCTTCTGGGTTCTTCGAGCTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCGATTGTTCTGTTTGAGGCCAACATCTTGGCTGTTTTGTCTGAGATTTTGTCCGCAATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAACACATCTTGGATGGAAGTTCTTACATGAAAACTGCAAAGAAATTGCACGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATCGAAGTTATTCGATTCTCAACCAAATCTATCGAAAGAGAGATTAACTCGGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCATCCATGGAGGCAACTTCCAAGGAACTCCCATTGGAGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTTCTACAACAATGGGCTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTAGATTATGGATTCAAAGGTGCAGAGATTGCGATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACGAGTCATGTACAGAGCGCCGAGCAACACAACCAAGATGTTAACTCGCTGGGTTTAATCTCTTCAAGGAAAACAGCGGAAGCCCTTGATATCTTAAAACTCATGTCTTCCACCTTTTTGGTTGCCCTCTGCCAAGCAATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAACGCAGTAAAAAGCTGTGTTAGCCAAACAGCCAAGAAAGTGTTGACCACATCCTCTAATGGAGCGCTTCACCCATCAAGGTTTTGTGAGAAGGATCTTCTAAAGGTTGTGGACAGAGAGTACACCTTCGCTTATATCGATGATCCATGCAGTGCCACTTACCCATTGAGCCAAAAGTTGAGGCAAGTCCTTGTTGAGCACGCACTTGGCAATGGTGATTGTGAAAAGGACGCAGACACTTCAATCTTCCAAAAGATTGGGGCTTTCGAGGAGGAACTAAAGGCAGTGTTACCAAAAGAAGTCGAAAATGCAAGGTCGTGGTACGAGAGTGGAAATTCCAAAATTGAGAATCAGATAAAGGACTGCAGATCTTATCCATTGTATAGGTTTGTGAGAGAAGAGTTGGGAACGAATCTACTGACAGGAGAAAAAGTCATGTCTCCGGGAGAAGAGTGCGAGAAGGTGTTCACAGCTCTGTGTGAAGGGAAGATGATCGACTCTATCTTGGAGTGCTTGAAAGAGTGGAACGGTGCTCCAATTCCCATCTGCTAA 1860 45.81 MESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLNAQEAFRQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEENLKNAVKSCVSQTAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALGNGDCEKDADTSIFQKIGAFEEELKAVLPKEVENARSWYESGNSKIENQIKDCRSYPLYRFVREELGTNLLTGEKVMSPGEECEKVFTALCEGKMIDSILECLKEWNGAPIPIC 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4376824 4378683 - CmaCh07G009190.1 Cma07g00919 298234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00919 619 Pfam Aromatic amino acid lyase 2 438 IPR001106 -
Cma07g00919 619 Gene3D Fumarase/aspartase (Central domain) 166 614 - -
Cma07g00919 619 SUPERFAMILY L-aspartase-like 2 619 IPR008948 GO:0003824
Cma07g00919 619 CDD PAL-HAL 1 429 IPR001106 -
Cma07g00919 619 Gene3D - 432 553 IPR023144 -
Cma07g00919 619 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 1 609 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cma07g00919 619 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 101 117 IPR022313 GO:0016841
Cma07g00919 619 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 619 - -
Cma07g00919 619 PANTHER HISTIDINE AMMONIA-LYASE 1 619 IPR001106 -
Cma07g00919 619 Gene3D - 1 165 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00919 Cma-Chr7:4376824 Cma20g00497 Cma-Chr20:2435852 0 dispersed
Cma07g00918 Cma-Chr7:4366313 Cma07g00919 Cma-Chr7:4376824 0 tandem
Cma07g00919 Cma-Chr7:4376824 Cma07g00920 Cma-Chr7:4385994 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00919 K10775 - csv:101218617 1158.28