Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00920 ATGGCCGCCATCCACCAAACCAACGACACTCTCTGCCCCATTACTACTCTTCCCGACCCACTCAACTGGGGTGTGGCTGCCGAGGCTCTCAAGGGGAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTCGGTGGTGAAACTCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAACCATGTGATGGTCCAACTGGCCGAGTCTGCTAGAGCGGGCGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGCTATGGTGTCACTACTGGCTTTGGTGCTACCTCTCATAGAAGGACCAATCAAGGTGGCGCTCTTCAGAAGGAGCTGATTCGATTCTTGAATGCTGGGATCTTTGGAAGTGGAGCTGAGTCCACCCATACTCTGCCCCACTCCGCTACCAGGGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTATTCGGGCATTCGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAATTCTAACATCACTCCCTGCTTGCCTCTTCGTGGAACCATCACTGCTTCGGGTGATCTTGTTCCTCTTTCTTATATTGCTGGATTGCTCACTGGCCGACCCAACTCTAAGGCGGTTGGACCAAATGGAGAGAGCCTTAATGCTCAGGAGGCTTTTCGACAAGCTGATATTCCTTCTGGGTTCTTCGAGCTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCGATTGTTCTGTTTGAGGCCAACATCTTGGCTGTTTTGTCTGAGATTTTGTCCGCAATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAGCATCATCCTGGTCAGATCGAGGCTGCTGCAATTATGGAACACATCTTGGACGGAAGTTCTTACATGAAAACTGCAAAGAAACTGCACGAAACCGATCCTCTCCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATCGAAGTTATTCGATTCTCAACCAAATCTATCGAAAGAGAGATTAACTCGGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCATCCATGGAGGCAACTTCCAAGGAACTCCCATTGGAGTCTCCATGGACAACACTCGTTTGGCCGTTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTTCTACAACAATGGGCTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTAGATTATGGATTCAAAGGTGCAGAGATTGCGATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACGAGTCATGTACAGAGCGCCGAGCAACACAACCAAGATGTTAACTCGCTGGGTTTAATCTCTTCAAGGAAAACAGCGGAAGCCCTTGATATCTTAAAACTCATGGCTTCCACCTTTTTGGTTGCCCTCTGCCAAGCAATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAACGCAGTAAAGAGCACCGTGAGTGTAGTGGCCAAAAAGGTTCTCACCACAGGTGCCAACGGTGCAGTTCACCCATCAAGATTCTGCGAGAAAGATTTACTGCAAGTAGTGGACAGAGAATACACCTTTGCATACGTAGATGATGCATGCAGTATGAGTTACCCATTGATGCAAAAATTGAGACAAGTTCTTGTGGATCATGCTTTGGGAAATGGTGAAGAGGAAAAGAACGCAAGCACTTCAATCTTCCAAAAGATAGGAGCTTTTGAAGAGGAATTAAAAGCCATGTTGCCCAAGGAAGTAGAGAAAGCAAGATTGTGGTATGAAAATGGAACGTCAGCCATTGAAAACCAAATTAAGGAGTGCAGATCTTATCCATTGTACAAATTTGTAAGGGAGGAGTTGGGAACAGGACTGGTAACTGGGGAGAAGGTGATATCTCCTGGAGAAGAAAGTGAGAAGGTGTTCACAGCTCTGTGTCAAGGGAAGATGATCGACCCAATTCTTGAATGCTTGAAGGAATGGAATGGTGCTCCTATCCCCATCTGCTAG 2133 47.02 MAAIHQTNDTLCPITTLPDPLNWGVAAEALKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDNHVMVQLAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLNAQEAFRQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEALDILKLMASTFLVALCQAIDLRHLEENLKNAVKSTVSVVAKKVLTTGANGAVHPSRFCEKDLLQVVDREYTFAYVDDACSMSYPLMQKLRQVLVDHALGNGEEEKNASTSIFQKIGAFEEELKAMLPKEVEKARLWYENGTSAIENQIKECRSYPLYKFVREELGTGLVTGEKVISPGEESEKVFTALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4385994 4388126 - CmaCh07G009200.1 Cma07g00920 298235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00920 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Cma07g00920 710 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cma07g00920 710 Gene3D - 523 644 IPR023144 -
Cma07g00920 710 Gene3D - 13 256 IPR024083 -
Cma07g00920 710 PANTHER HISTIDINE AMMONIA-LYASE 16 710 IPR001106 -
Cma07g00920 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824
Cma07g00920 710 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 710 - -
Cma07g00920 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Cma07g00920 710 CDD PAL-HAL 55 520 IPR001106 -
Cma07g00920 710 Pfam Aromatic amino acid lyase 57 530 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01230 Cma-Chr3:8140438 Cma07g00920 Cma-Chr7:4385994 0 dispersed
Cma07g00915 Cma-Chr7:4339661 Cma07g00920 Cma-Chr7:4385994 1.00E-168 dispersed
Cma07g00917 Cma-Chr7:4358132 Cma07g00920 Cma-Chr7:4385994 0 dispersed
Cma07g00918 Cma-Chr7:4366313 Cma07g00920 Cma-Chr7:4385994 0 dispersed
Cma07g00920 Cma-Chr7:4385994 Cma20g00497 Cma-Chr20:2435852 0 dispersed
Cma07g00919 Cma-Chr7:4376824 Cma07g00920 Cma-Chr7:4385994 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00920 K10775 - csv:101218144 1295.8