Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00923 ATGATTACGTTTATGGATTCGAAAGAGAAAGTGAAAGATATGGAGAAATGCTTAGATCCTCAGCTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGTCATGCCGAGCATGCTTGTGCGCCAGTTGATTTCAGGAACTGTTCTAAGGTTCCTCCATATACCCTTTGTAGAGTTTCTGCTATCAAGTTCCTTGCCGATCCCGACACGGATGAGGTCTTTGCTAAACTCAGGTTGATTCCCATTAATGGAAGTGAACTAGAGTTTGAAGATGATGGTATTGGAAGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCGTTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCGAGGTATTGTGCTGAAACGATCTTCCCTCGGTTGGATTACTCGGCCGATCCGCCGGTTCAGACGATTCTTGCTAAGGATGTTCATGGGGAGACATGGAAATTCAGACACATTTACCGTGGGACGCCTCGGCGACATCTTTTAACGACGGGATGGAGTACGTTTGTTAACCATAAGAAGCTTGTGGCTGGTGATTCCATTGTGTTCTTGAGGGCTGAAAATGGAGATCTCTGCGTCGGGATTAGACGAGCGAAGAGAGGAATTGGAGATGGACCGGAACCGCCGTGTGGATGGAATCCAGCAGGTGGGAACTGTGCTGTGCCTTATGGAGCTTTCTCAACGTTCTTGAGGGAAGATGAAAACAGAGTGAACAGGACTAATGGAAAAGGGAAAGTGAAGGCTGAATCAGTCATTGAGGCTGCTACACTTGCTGCAAATGGGCAGCCCTTTGAAATAGTATACTATCCAAGAGCTAGTACTCCTGAGTTCTGTGTCAAGGCAGGGCTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCGGGTATGCGGTTCAAGATGGCGTTCGAAACCGAGGACTCTTTGCGGATAAGCTGGTTCATGGGTACCATAAACACCGTTCAGGCCGCCGACCCACTGCGCTGGCCTGAATCACCATGGAGGCTTCTACAGGTTACTTGGGACGAGCCCGATTTACTTCAGAATGTGAAACGTGTTAGCCCGTGGTTGGTCGAATTGGTATCAAACATATCTCCGATTCATCTTGCCCCGTTCTCACCTCCAAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCTCGATAACAAGCCTTCTATGTCGCCGTTCGCGAGTTATCTCCATGGGCCAGGCAGCCCCTTCGGTTGTCCTCCGGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCGGATTTTCATCTCAGTAAACTGCAGTCGGGTCTGTTTCCGATTCGTTATCGATCACTGGATCCAGCTGCTAGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAGCCAAGTATGAGTGAAAATGTATCTTGCTTGCTAACCATGGCGCATTCTACTCAAACGTCGAAGAAATTCGACAACGTAAAGACTCCACAGCTAATACTTTTCGGCAGACCCATACTAACCGAATTGCAGATGTCTCAAAGCTGTTCTGGTGATACCGTTTCTCCAGTTGGTACTGGAAACAGTTCGTCGGATGGAAACGGTTCTGGATCTGCACTACATCAACAAGGTCTACCAGAACGCTCGTCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGATGTCGAGCCTAACTTGGATACTGGCCACTGTAAAGTCTTCATGGAATCAGAAGACGTCGGTCGCACCCTCGATCTTTCTTCAGTTGGGTCCTATGAAGAATTGTACAGAAAACTCGGAAACATGTTCGGCATCGATAACTCAGAGATGTTGAACCATGTCTTGTACCGGGATATCTCCGGTGCTGTCAAGCACGTCGGCGACGAACAATTCAGCGAGTTCATCAAGACGGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGGTTAG 2040 47.7 MITFMDSKEKVKDMEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACAPVDFRNCSKVPPYTLCRVSAIKFLADPDTDEVFAKLRLIPINGSELEFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPEPPCGWNPAGGNCAVPYGAFSTFLREDENRVNRTNGKGKVKAESVIEAATLAANGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSLRISWFMGTINTVQAADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNISPIHLAPFSPPRKKFRYPQHPDFPLDNKPSMSPFASYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPIRYRSLDPAARSTRLSGNAMTEKPSMSENVSCLLTMAHSTQTSKKFDNVKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGSGSALHQQGLPERSSCENFQWYKDNRQDVEPNLDTGHCKVFMESEDVGRTLDLSSVGSYEELYRKLGNMFGIDNSEMLNHVLYRDISGAVKHVGDEQFSEFIKTARRLTILTDSGSNNVGG 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4422962 4426328 + CmaCh07G009230.1 Cma07g00923 298238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00923 679 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma07g00923 679 PANTHER AUXIN RESPONSE FACTOR 6 670 - -
Cma07g00923 679 Gene3D - 314 388 - -
Cma07g00923 679 SUPERFAMILY DNA-binding pseudobarrel domain 114 224 IPR015300 -
Cma07g00923 679 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Cma07g00923 679 ProSiteProfiles PB1 domain profile. 593 673 IPR000270 GO:0005515
Cma07g00923 679 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Cma07g00923 679 MobiDBLite consensus disorder prediction 536 569 - -
Cma07g00923 679 CDD B3_DNA 119 220 IPR003340 GO:0003677
Cma07g00923 679 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma07g00923 679 Gene3D - 118 222 IPR015300 -
Cma07g00923 679 SMART B3_2 120 222 IPR003340 GO:0003677
Cma07g00923 679 Gene3D - 591 677 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00923 Cma-Chr7:4422962 Cma12g00140 Cma-Chr12:610877 7.06E-103 dispersed
Cma03g01237 Cma-Chr3:8187091 Cma07g00923 Cma-Chr7:4422962 5.59E-142 transposed
Cma15g00461 Cma-Chr15:2049668 Cma07g00923 Cma-Chr7:4422962 0 wgd
Cma02g00897 Cma-Chr2:5336352 Cma07g00923 Cma-Chr7:4422962 0 wgd
Cma20g00489 Cma-Chr20:2380923 Cma07g00923 Cma-Chr7:4422962 0 wgd
Cma03g01236 Cma-Chr3:8185388 Cma07g00923 Cma-Chr7:4422962 0 wgd
Cma04g02570 Cma-Chr4:17655759 Cma07g00923 Cma-Chr7:4422962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35420 PF02362 B3 1.50E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00923 - - csv:101217039 1263.83