Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00926 ATGTCGGCCGCCAAGGACTACCAAGACCCGCCTCCGACCCCATTGATCGACGTTGAAGAGTTTACTCAGTGGTCATTTTACAGAGCCATTATCGCTGAGTTCGTCGCCACGCTTCTGTTCTTGTACATTCTTGTTCTCACTGTGATTGGATCTTCCAAGTTGTCGGACACTGAAAGCCACTGCGGTGGGGTTGGCGTTTTGGGTATTTCCTGGGCTGTCGGTGGCATGATCTTCGTCCTTGTTTACTGTACGGCTGGAATTTCTGGAGGGCATATTAACCCGGCGGTGACGTTCGGGCTGTTATTGGCTCGAAAAATCTCTCTAATCAGAGCTGTTCTTTACATTATGGCTCAATGTTTGGGGGCCATTTGTGGGTGTGGGTTAGCTAAATCGTTTCAGAAGGGTTATTACGTTCGGTTCAAAGGTGGAGCCAATATGCTCTCCGATGAGTACAGCATCGGCACCGGCTTAGCCGCAGAGATCATCGGGACTTTTGTTCTTGTTTACACTGTCTTCTCTGCCACAGACCCCAAGAGAAACGCTAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCAGTGTTTATGGTTCATCTAGCCACTATTCCGATCACCGGCACCGGCATAAACCCAGCTCGAAGCTTAGGAGCTGCAGTGATCTATAACGAAGCTGAAGCCTGGGATCACCATTGGATCTTTTGGGTTGGGCCCTTCATTGGAGCTGCCATTGCTACCATTTATCATCAAGTCATAATAAGAGCAGGGGCAGTCAAAGCACTGGGCTCTTTCAGAAGTTCCTCCGCCGTATAA 822 49.76 MSAAKDYQDPPPTPLIDVEEFTQWSFYRAIIAEFVATLLFLYILVLTVIGSSKLSDTESHCGGVGVLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISLIRAVLYIMAQCLGAICGCGLAKSFQKGYYVRFKGGANMLSDEYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNEAEAWDHHWIFWVGPFIGAAIATIYHQVIIRAGAVKALGSFRSSSAV 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4445014 4446837 - CmaCh07G009260.1 Cma07g00926 298241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00926 273 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 Gene3D Glycerol uptake facilitator protein. 13 273 IPR023271 -
Cma07g00926 273 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 3 270 - -
Cma07g00926 273 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Cma07g00926 273 Pfam Major intrinsic protein 21 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 270 IPR034294 -
Cma07g00926 273 SUPERFAMILY Aquaporin-like 20 257 IPR023271 -
Cma07g00926 273 CDD MIP 28 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00926 273 TIGRFAM MIP: MIP family channel proteins 32 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00926 Cma-Chr7:4445014 Cma04g01369 Cma-Chr4:7014589 1.32E-151 dispersed
Cma07g00926 Cma-Chr7:4445014 Cma07g00928 Cma-Chr7:4452094 5.37E-163 proximal
Cma02g00891 Cma-Chr2:5289215 Cma07g00926 Cma-Chr7:4445014 1.74E-161 wgd
Cma20g00484 Cma-Chr20:2339049 Cma07g00926 Cma-Chr7:4445014 7.96E-161 wgd
Cma03g01239 Cma-Chr3:8200297 Cma07g00926 Cma-Chr7:4445014 1.29E-171 wgd
Cma04g02577 Cma-Chr4:17684866 Cma07g00926 Cma-Chr7:4445014 8.48E-155 wgd
Cma06g00375 Cma-Chr6:1736779 Cma07g00926 Cma-Chr7:4445014 8.60E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00926 K09872 - csv:101215604 477.248