Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00928 ATGGCCAAGGATTCTGAAGCTGGAGGATTCGCCGCCAAGGACTACCACGACCCACCTCCGGCGCCGTTGATCGACGTCGAGGAGTTCACTCAGTGGTCATTCTACAGAGCCATCATTGCCGAGTTCATCGCCACGCTTCTGTTCTTGTACGTTACTGTTCTCACTGTCATTGGCTACAGCAGCCAGTCCGACGTCGACCACGGGGGCCATATCTGCGGCGGGGTCGGCATTCTCGGCATCGCTTGGGCCTTTGGTGGAATGATCTTCGTTCTTGTTTACTGCACCGCTGGGATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGTTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGGGCCGTTTTGTATATGGTGGCTCAGTGTGTTGGAGCCATTTGTGGATGTGCGTTGGTCAAATCGTTTCAGAAGGGTCTCTACAATCGCTACGGCGGTGGAGCCAATTCGCTAGCCGAAGGTTACAGTACCGGCACCGGCTTAGCCGCTGAGATTATCGGAACCTTCGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGCGCTAGAGATTCTCACATTCCTGTACTAGCACCACTCCCAATTGGGTTCGCCGTGTTCATGGTTCACCTGGCCACCATTCCGATCACCGGCACCGGTATTAACCCAGCTCGAAGCTTCGGCGCTGCAGTGGTGTTCAACCACAGCAAGCCCTGGAATGACCATTGGATTTTCTGGGTTGGGCCCTTCATTGGAGCTCTCATTGCTGCGTTTTATCACCAGTTCATATTGAGAGCTGGAGCAGTTAAAGCTCTGGGATCCTTCAGGAGTACCCACAGTGTCTAA 855 53.45 MAKDSEAGGFAAKDYHDPPPAPLIDVEEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDVDHGGHICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCVGAICGCALVKSFQKGLYNRYGGGANSLAEGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNHSKPWNDHWIFWVGPFIGALIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4452094 4454055 + CmaCh07G009280.1 Cma07g00928 298243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00928 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cma07g00928 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cma07g00928 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PANTHER AQUAPORIN PIP2-4-RELATED 6 281 - -
Cma07g00928 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Cma07g00928 284 TIGRFAM MIP: MIP family channel proteins 40 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma07g00928 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 281 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01239 Cma-Chr3:8200297 Cma07g00928 Cma-Chr7:4452094 4.46E-159 dispersed
Cma03g01240 Cma-Chr3:8202908 Cma07g00928 Cma-Chr7:4452094 0 dispersed
Cma04g01369 Cma-Chr4:7014589 Cma07g00928 Cma-Chr7:4452094 7.12E-175 dispersed
Cma04g02577 Cma-Chr4:17684866 Cma07g00928 Cma-Chr7:4452094 1.24E-170 dispersed
Cma07g00928 Cma-Chr7:4452094 Cma20g00484 Cma-Chr20:2339049 3.49E-168 dispersed
Cma11g01375 Cma-Chr11:9078606 Cma07g00928 Cma-Chr7:4452094 1.77E-157 dispersed
Cma07g00926 Cma-Chr7:4445014 Cma07g00928 Cma-Chr7:4452094 5.37E-163 proximal
Cma15g00457 Cma-Chr15:2035913 Cma07g00928 Cma-Chr7:4452094 1.03E-08 wgd
Cma18g00891 Cma-Chr18:7695873 Cma07g00928 Cma-Chr7:4452094 2.56E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00928 K09872 - csv:101214884 541.576