Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00934 | ATGTCTGAACAAAGCTCTCAACTTTATCATCTTCCTCATAACCCTAACCCTAACCCTAAAAAAAAGAGAAATTTGCCAGGAAAACCAGATCCAGACGCCGAGGTGATTTCTTTATCGCCGAACGCTCTAATGGCGACGAACCGATTCATATGTGAGATATGCAACAAAGGGTTTCAAAGGGATCAGAACTTGCAGCTTCATAGAAGAGGGCATAATCTGCCATGGAAGCTTAGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTTTATATTTGCCCAGAAAAGTCTTGTGTTCATCATGATCCAGCTAGAGCACTTGGAGACCTGACTGGAATCAAGAAGCATTTTAGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGAACTCGAGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTCTGCGACGCTCTAGCGGACGAAAGCGGCAGGCTAATCTCATCGGTAGCAGCAGCAGCAGCAGCCGCAGCAGCAAATTCAACCCCAAATTTCATTGCCAATTCACTCAACGAATCTCTCTTCAATTCCCAAGGCGGAATCTTTGTCCAATCAGACCATAATAACTTTCCCATCAACACCACCTTCCCTTTCCCCCAAATTCCACCCTCTAATCTCTTCCAAATCTCCAACCGAATTCTGGGTCTGAATAAAAACTCTTCAAAAACAGCCGTGAACCTCTCGTCGTTTTGCTCGGGCGGTAGTGGCGGTGGAGGGAAGTCAATTATCCCGATGTCGGCTACGGCATTGCTGCTGAAGGCGGCGCATTTCGGGTCTATGAAAAGTATTCCGTCGTTCTCTGGGAATAGTGTGGGAGTTATGAGTTCGTCTTCGAGTTCGTTTGATCAGAGCAAAGGGGAGTTGCAGCGAATGGGCTCCAATGGCGGAAATGGGAACGGGTTGAGGGATTTTTTGGGTACGAGGGAGAGAGAAGGGAATGGGAATGTGGAGTTGGTTTCGTTAATGGAGATGTCGAAATTTGGAAGCTCTATGAGCTCGGAGATGGGGTTGAGCGAGTTCATTGGGAATGCTCGGGGATGA | 1152 | 45.92 | MSEQSSQLYHLPHNPNPNPKKKRNLPGKPDPDAEVISLSPNALMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALADESGRLISSVAAAAAAAAANSTPNFIANSLNESLFNSQGGIFVQSDHNNFPINTTFPFPQIPPSNLFQISNRILGLNKNSSKTAVNLSSFCSGGSGGGGKSIIPMSATALLLKAAHFGSMKSIPSFSGNSVGVMSSSSSSFDQSKGELQRMGSNGGNGNGLRDFLGTREREGNGNVELVSLMEMSKFGSSMSSEMGLSEFIGNARG | 383 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4486189 | 4488671 | - | CmaCh07G009340.1 | Cma07g00934 | 298249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00934 | 383 | Gene3D | Classic Zinc Finger | 32 | 101 | - | - | |
| Cma07g00934 | 383 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 11 | 317 | - | - | |
| Cma07g00934 | 383 | MobiDBLite | consensus disorder prediction | 319 | 346 | - | - | |
| Cma07g00934 | 383 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 11 | 317 | - | - | |
| Cma07g00934 | 383 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 145 | IPR036236 | - | |
| Cma07g00934 | 383 | Gene3D | Classic Zinc Finger | 103 | 180 | - | - | |
| Cma07g00934 | 383 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Cma07g00934 | 383 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 51 | 71 | IPR013087 | - | |
| Cma07g00934 | 383 | MobiDBLite | consensus disorder prediction | 319 | 333 | - | - | |
| Cma07g00934 | 383 | Pfam | Zinc-finger double-stranded RNA-binding | 49 | 71 | IPR022755 | - | |
| Cma07g00934 | 383 | SMART | c2h2final6 | 49 | 71 | IPR013087 | - | |
| Cma07g00934 | 383 | SMART | c2h2final6 | 90 | 120 | IPR013087 | - | |
| Cma07g00934 | 383 | SMART | c2h2final6 | 125 | 145 | IPR013087 | - | |
| Cma07g00934 | 383 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 49 | 71 | IPR013087 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma07g00934 | Cma14g00204 | CCT | |
| Cma06g00370 | Cma07g00934 | CCT | |
| Cma07g00934 | Cma14g00204 | ECH | |
| Cma06g00370 | Cma07g00934 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00934 | Cma-Chr7:4486189 | Cma03g00762 | Cma-Chr3:5974951 | 3.62E-113 | dispersed | |
| Cma14g00204 | Cma-Chr14:883176 | Cma07g00934 | Cma-Chr7:4486189 | 3.54E-118 | wgd | |
| Cma06g00370 | Cma-Chr6:1719002 | Cma07g00934 | Cma-Chr7:4486189 | 1.41E-115 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35421 | PF12171 | zf-C2H2_jaz | 5.30E-05 | CL0361 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00934 | K25870 | - | csv:101221389 | 416.387 |