Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00939 ATGTTGGATCTCAATCTCTGTATTCTCTCCGGAGATTCCGCCTCCGCCTCCGGTTCCGGTTCCGCCGATCATTCCAACACCACCGCCGACGAGGATTTCTCTTCCAACGTCAACTCTGGTTTCACTTTCTCTTTCAGTATCCTCAACAACAACGGCACCGAAGATCAACTTGACCGGACGGCCCTGTTTCACCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATCAGTCTGTTAAGCCGGTGAAGAAGGGCCGACGAGGCCCCAAATCAAGAAGCTCGCAGTATCGTGGGGTTACTTGTTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAACGGGAAGCAAGTCTATTTGGGCGGTTTTGACACGGCCCATTCTGCAGCGAGGGCTTACGATCGAGCGGCAATCAAGTTTCGAGGTGTTCATGCGGATATTAACTTCGATATCAGCGACTACAGAGAGGAGATTAAAGAGATGAGGAATTTGAGTAAAGAGGAGTTTGTGCACATTCTTCGACGGCAGAGCAATGGGTTTTCGCGAGGGAGTTCCAAATACAGAGGGGTTACTCTGCATAAGTCCGGCCGATGGGAGGCTCGTATGGGCCAGTTTTCAGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGGTAGAAGCAGCAAGAGCATATGATAAGGCAGCCATAAAACACAACGGAAGGGAAGCTGTAACCAATTTTGATCAGAGCTGTTATTATGGCATGGAGATTGCCTTTGAATCTGAAAGCCATGGCGATATTGACCTGAGCTTGGGCATTGCTCCTCCATGTCCACCCGAACACCAAACCGATAACCGAGTTGGCCGATCCCAACCCCCTACGGTGGAGCATCCTCACTCCCTTTCTTCTCCGCCTCAGCAGCATCATCAGGATTCCCTTCTTCTCCCGCCCTCACCTCGCCACCTTCCTCCAGCCTCACCTTTCCTCCGCTACCACATTCCGCCCTCTATTTCCGCTGCTAGTAACCGTCTATTATTATGA 1032 51.36 MLDLNLCILSGDSASASGSGSADHSNTTADEDFSSNVNSGFTFSFSILNNNGTEDQLDRTALFHPVAGVCSQRKWLDQSVKPVKKGRRGPKSRSSQYRGVTCYRRTGRWESHIWDNGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFDISDYREEIKEMRNLSKEEFVHILRRQSNGFSRGSSKYRGVTLHKSGRWEARMGQFSGKKYVYLGLFDSEVEAARAYDKAAIKHNGREAVTNFDQSCYYGMEIAFESESHGDIDLSLGIAPPCPPEHQTDNRVGRSQPPTVEHPHSLSSPPQQHHQDSLLLPPSPRHLPPASPFLRYHIPPSISAASNRLLL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4516453 4519454 - CmaCh07G009390.1 Cma07g00939 298254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00939 343 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 281 - -
Cma07g00939 343 SUPERFAMILY DNA-binding domain 187 246 IPR016177 GO:0003677
Cma07g00939 343 MobiDBLite consensus disorder prediction 266 317 - -
Cma07g00939 343 Pfam AP2 domain 96 144 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 Pfam AP2 domain 187 235 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 PRINTS Ethylene responsive element binding protein signature 189 200 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 PRINTS Ethylene responsive element binding protein signature 227 247 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 SMART rav1_2 96 158 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 SMART rav1_2 188 251 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 CDD AP2 95 154 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 281 - -
Cma07g00939 343 Gene3D AP2/ERF domain 187 246 IPR036955 GO:0003700|GO:0006355
Cma07g00939 343 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Cma07g00939 343 CDD AP2 187 247 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 ProSiteProfiles AP2/ERF domain profile. 96 152 IPR001471 GO:0003700|GO:0006355
Cma07g00939 343 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Cma07g00939 343 MobiDBLite consensus disorder prediction 281 310 - -
Cma07g00939 343 ProSiteProfiles AP2/ERF domain profile. 188 245 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00939 Cma-Chr7:4516453 Cma07g00631 Cma-Chr7:2740186 6.75E-12 dispersed
Cma14g00185 Cma-Chr14:775692 Cma07g00939 Cma-Chr7:4516453 8.30E-97 wgd
Cma02g00857 Cma-Chr2:5007350 Cma07g00939 Cma-Chr7:4516453 3.86E-110 wgd
Cma20g00457 Cma-Chr20:2186182 Cma07g00939 Cma-Chr7:4516453 1.17E-103 wgd
Cma04g00262 Cma-Chr4:1293232 Cma07g00939 Cma-Chr7:4516453 6.27E-10 wgd
Cma04g01236 Cma-Chr4:6333575 Cma07g00939 Cma-Chr7:4516453 4.97E-10 wgd
Cma06g00347 Cma-Chr6:1612143 Cma07g00939 Cma-Chr7:4516453 5.76E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35423 PF00847 AP2 7.70E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00939 K09284 - csv:101211008 412.92