Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00944 ATGAGTGCTAATGCCGACAGGCACAAAGTGAAAGAGTTAAGAGGACCAAATTGTAACGCACAGGATGGGAATGGAAGTGTGAGCGATGGTGTGTCTGGAAGGGAACAGAGACCGGTGGAGGAAAATGAGTTGAAGGTCAATGGATTGACTAGAAATGCAGAAGATGGGCGAAATCCTACTGTTCAAGCCCAGGACATTGTACAAATACAACAGCAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTAGAAAACGATGACTCCACTCGCCATCTAGTCACTGCACTGCTTCGAAATTGCAGTTATGAAGTTATTGCAGCTGCAAATGGACTACACGCATGGAAGGTGCTAGAAGATCTGACAAATCACATAGATCTTGTCTTAACAGAGCTGGTCATGCCTTGCTTATCGGGCATCGGTCTTTTATGCAAGATTATGAGCCATAAAACAAGGAAGAATATACCTGTGATTATGATGTCTTCTCATGACTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTCGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGTCATAGTTCTAGCGGTAGTGGATGTGAAAGTGGCACGCAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTCAAAAATCAGATAACAACACCGGGAGCAATGAAGAAGAAGAAGACAATGAGAGCATTGGCTTCAATATTGGAGATGGAAGTGACGACGGCAGTGGCACCCAGAGTTCTTGGACCAAGCAAGCTATAGAGGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAGCGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGGTAATAACGTATCACCTGTTTTGACAGCCGAGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTTCCGTGGGTAGAGTTGAATTAGGCGTGCACATAAATCTAGATTTACAACTTGAACTGTCTGCGGAACATCCAACCAAGCTAGCTAACAGACAACAGAATATTATGCTTGAGATAGGATCCAATGGATTTAATGAGCAGTTTAACGAACAAACAAATGTTACTGGTCTTGCTACAAATCTTAAAGATTCTAAGTTGGGTGTCACAGTGTTTGAGGCACCAACCAGCAATCCCAAGATAGACATTAAGAATAAAGATGTTACAGATTCAGGAGAATTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCAGACCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCGAACTGGGAATGCTGGGAGTAACTCTTCTCCTTTTCTTTGCTTAGAAGTTACAAACCAAGAGAACATGCAAGATATTCGATCTCATTCGAGTGGTAATCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACGAATAATGCATTTTCCAAGTCCATAGTCATTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGAACCCGTTGGCCCAACCTATTAAGAATGACAGTCTATCTGTTCCTCAGCAAGCTGATACTACCAATAACGGTACAATTACAACAATGCAAACTCAGTCTAATTGTGTGCACGGGGAATCTCAAATTCAGCAACTTTGTCAAACGTATGATCACACTCATCTGCTTGCCCAAAATAATCAACAAAAGTCATCTGAGCGTAATGATTTTTCATTAAAGAAAATATCAGCTGCGACACATTGTGGGTCATCCAATGTGTTAAATGGCCCTGTAGAAGGTAATGCAGCAAATTATAGTGTGAATGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCAGCACTGCAGTAAATGCTGGAGGGCTGAATCTGGAAAGTGATAATGGAATAGGCCGGAAAAGTCGAAGTGGGGATGCCAGTGGAAGTGGTAGTGGAAGTGGAAACAAAGTGGACCAAGACAAAGTCTCACAAAGGGAAGCAGCCTTGACAAAGTTTCGCCAGAAACGGAAGGAAAGATGCTTCCATAAAAAGGTGCGATACCAAGGCAGAAAGAAATTGGCAGAACAGAGGCCCCGTGTGAAGGGACAGTTCGTGAGACAAAACACAAGCGAAAACACGAGCAATGTTGGAGATGGCTAA 2295 42.88 MSANADRHKVKELRGPNCNAQDGNGSVSDGVSGREQRPVEENELKVNGLTRNAEDGRNPTVQAQDIVQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKVLEDLTNHIDLVLTELVMPCLSGIGLLCKIMSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGCESGTQTQKSVKSKSVQKSDNNTGSNEEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFGNNVSPVLTAECQVQKKQLETVSVGRVELGVHINLDLQLELSAEHPTKLANRQQNIMLEIGSNGFNEQFNEQTNVTGLATNLKDSKLGVTVFEAPTSNPKIDIKNKDVTDSGEFPSLELGLKRLRGVQTTGKADQDERNVLRRSDSSAFSRYNAGSNSNKTRTGNAGSNSSPFLCLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVINNKSAMASTVNCLNPLAQPIKNDSLSVPQQADTTNNGTITTMQTQSNCVHGESQIQQLCQTYDHTHLLAQNNQQKSSERNDFSLKKISAATHCGSSNVLNGPVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNLESDNGIGRKSRSGDASGSGSGSGNKVDQDKVSQREAALTKFRQKRKERCFHKKVRYQGRKKLAEQRPRVKGQFVRQNTSENTSNVGDG 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4542001 4550878 + CmaCh07G009440.1 Cma07g00944 298259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00944 764 MobiDBLite consensus disorder prediction 441 481 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 263 278 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 648 674 - -
Cma07g00944 764 CDD psREC_PRR 93 196 - -
Cma07g00944 764 ProSiteProfiles Response regulatory domain profile. 92 210 IPR001789 GO:0000160
Cma07g00944 764 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 740 IPR045279 GO:0009736
Cma07g00944 764 MobiDBLite consensus disorder prediction 442 457 - -
Cma07g00944 764 SMART REC_2 91 206 IPR001789 GO:0000160
Cma07g00944 764 MobiDBLite consensus disorder prediction 704 719 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 720 735 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 681 703 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 499 518 - -
Cma07g00944 764 Gene3D - 90 255 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 1 15 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 216 300 - -
Cma07g00944 764 Pfam Response regulator receiver domain 93 204 IPR001789 GO:0000160
Cma07g00944 764 MobiDBLite consensus disorder prediction 34 50 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 648 764 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 1 58 - -
Cma07g00944 764 SUPERFAMILY CheY-like 89 215 IPR011006 -
Cma07g00944 764 ProSiteProfiles CCT domain profile. 710 752 IPR010402 GO:0005515
Cma07g00944 764 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 28 740 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 216 242 - -
Cma07g00944 764 MobiDBLite consensus disorder prediction 458 481 - -
Cma07g00944 764 Pfam CCT motif 710 752 IPR010402 GO:0005515
Cma07g00944 764 MobiDBLite consensus disorder prediction 747 764 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00944 Cma-Chr7:4542001 Cma14g02156 Cma-Chr14:14772231 1.29E-16 dispersed
Cma03g00464 Cma-Chr3:4713442 Cma07g00944 Cma-Chr7:4542001 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35424 PF00072 Response_reg 5.20E-20 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00944 K12129 - csv:101210765 1161.75