Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00958 ATGTTAATGGGAAACGCCCATGGCCACCGCAAGCATTTCAACCATGGGGTAAATTCCTCTCCATCCACTAACGCTCATTCTCCCTCCAATAAATATACGCCATCTGGATCAGCTCCTCCAATTTCGACCTCGACTGCCAAGATGGAGTCCTTGCCCTATGCCCTCGTTGATTCGAGTCTTCGTGCCCTTGCCGGTCAGGCCGAGGGATTTGGCCGCGCTTCCATTGGTGGTCTCCATGGTTCTGTATATTGCGTTACTAATTTGGAAGACGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCTCTTTGGATTATCTTCGAAGTTTCAGGCACAATTCACTTGTCTTCGTATTTGAACGTGTCATCTTTTAAGACTGTAGATGGTCGTGGTCAAAGGATAAAGCTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATATTGATGGAATTCAAATTAAACCGAATTCCCGCCACATATGGATAGACCGTTGCAGCCTCCAAGACTACGATGACGGGCTGATTGATATCACCCGGGGAAGTACAGATATCACAGTTTCTAGGTGTCGCTTCTCACGGCACGACAAAACAATGCTCATTGGAGCCGATCCCTCTCACATTGGCGACCGATGTATCCGTGTAACTATCCACCACTGTTTTTTCGATGGTACACGTCAACGACATCCACGTGTTCGATATGGTAAAATACATCTTTACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTTGAATCACAGATACACTCTCAGTGCAACATATACGAAGCGGGACAGAAAAAAGTGGCATTCAAATATCTAACTGAAAAGGCAACAGACAAGGAAGAACCTTCAAGTGGGTGCATATGGTCTGAGGGAGATTTATTTGTAAGTGGCACTCAAAGTGGGCTGCTGCCTGCCACTGCCGGTCAAAGCATGTTTCATCCTTCAGATCATTACTCTGCTTGGACTGTAGAACCTCCCACCGATGCTCTGAAACAGATACTCCAACATTGTACTGGTTGCCAAAACATCCCTAGGCCCTGTGATCTGCCACTTGTACCTTAG 1137 46.35 MLMGNAHGHRKHFNHGVNSSPSTNAHSPSNKYTPSGSAPPISTSTAKMESLPYALVDSSLRALAGQAEGFGRASIGGLHGSVYCVTNLEDDGPGSLRFGCRMKEPLWIIFEVSGTIHLSSYLNVSSFKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDIDGIQIKPNSRHIWIDRCSLQDYDDGLIDITRGSTDITVSRCRFSRHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYGKIHLYNNYTRNWGIYAVCASVESQIHSQCNIYEAGQKKVAFKYLTEKATDKEEPSSGCIWSEGDLFVSGTQSGLLPATAGQSMFHPSDHYSAWTVEPPTDALKQILQHCTGCQNIPRPCDLPLVP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4625139 4628303 + CmaCh07G009580.1 Cma07g00958 298273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00958 378 Gene3D - 54 361 IPR012334 -
Cma07g00958 378 SUPERFAMILY Pectin lyase-like 64 371 IPR011050 -
Cma07g00958 378 Pfam Pectate lyase 122 283 IPR002022 -
Cma07g00958 378 MobiDBLite consensus disorder prediction 1 43 - -
Cma07g00958 378 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Cma07g00958 378 PRINTS Pollen allergen Amb family signature 246 265 IPR018082 -
Cma07g00958 378 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Cma07g00958 378 PANTHER PECTATE LYASE 18-RELATED 45 371 IPR045032 GO:0030570
Cma07g00958 378 PANTHER PECTATE LYASE 45 371 - -
Cma07g00958 378 SMART amb_all 78 291 IPR002022 -
Cma07g00958 378 MobiDBLite consensus disorder prediction 15 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00958 Cma-Chr7:4625139 Cma03g00550 Cma-Chr3:5115749 6.52E-52 dispersed
Cma03g00450 Cma-Chr3:4652415 Cma07g00958 Cma-Chr7:4625139 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00958 K01728 - csv:101219724 679.863