Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00964 | ATGAATATCCAAGTTAGCCGATGGTGTGCCTCAGCCAAACCTTTCCTGTCTGTGGTGTTCTTGCAGTTTGGGCTTGCAGGAATGGACATTCTTTCAAAAGCAGCTCTCAACCAAGGAATGAGCAACTATGTTCTTGTTGTTTATCGCCATGCAGTTGCCACAATTGTTATAGCTCCTTTTGCATTGATTTTTGACAAGAAGGTCAGACCAAAGATGACAATTCCAGTCTTTGCCAAGCTAATAGTGCTCAGCTTGCTAGAGCCTGTGATTGATCAGAACTTATATTTCTTGGGTATGAAGTACACAACAGCAACTTTTGCAGCTGCTATGTGCAATATTCTTCCTGCCATAACCTTTGTAATGGCTTGGATCCTCAGGCTTGAGAAGGTTAAAATCAAAAGCATCAGAAGCCAAGCGAAGATAGTGGGAACCATAGCAACAGTAGGAGGAGCCATGATAATGACACTGATTAAGGGCCCAATTTTAGAGCTATTTTGGGTAAACGAAAAAGCAGATCATCAACAACAACAAAGGGGTGATATCAGCCTTCAACACACAATCAAAGGCTCAATTATGATCACAATTGGCTGTTTCAGCTGGGCCTGCTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCCGCTGAGCTTTCTCTCACGGCTTGGATCTGCCTGTTGGGCACTGCGGAGGGCACTGTGTTGGCGTTGGTGATGGAAAGAGGAAATGCCGCCGTTTGGAGCATTACTTGGGGAACTAAATTGCTCGCCGCTGTTTATAGTGGAATATTCTGTTCAGGACTTGCTTATTACATTCAAGGAATAGTGATGAAAGACAAAGGACCTGTCTTTGTGACTGCCTTTAGCCCATTGAGCATGGTCATTGTCGCCATTATGAGTTCGTTCATTCTCGGCGAGCGTCTTTACTTTGGAAGGGTACTTGGAGCTGGTGTGATAATTGTAGGGCTATACCTTGTGGTTTGGGGCAAAAACAAAGATGGAAACGGCTCAAGTGAAGACCTCAAATTGCCCACCAAACAAACCCAAGAAATTGAAGCATCTAATTCAATTGGTCTAAACAATGACCCAAAATAA | 1095 | 43.56 | MNIQVSRWCASAKPFLSVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPVFAKLIVLSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVKIKSIRSQAKIVGTIATVGGAMIMTLIKGPILELFWVNEKADHQQQQRGDISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSITWGTKLLAAVYSGIFCSGLAYYIQGIVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRVLGAGVIIVGLYLVVWGKNKDGNGSSEDLKLPTKQTQEIEASNSIGLNNDPK | 364 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 4659149 | 4661952 | - | CmaCh07G009640.1 | Cma07g00964 | 298279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00964 | 364 | Pfam | EamA-like transporter family | 23 | 135 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma07g00964 | 364 | Pfam | EamA-like transporter family | 188 | 327 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma07g00964 | 364 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 48 | 156 | - | - | |
| Cma07g00964 | 364 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 234 | 332 | - | - | |
| Cma07g00964 | 364 | PANTHER | WAT1-RELATED PROTEIN | 9 | 337 | IPR030184 | GO:0016021|GO:0022857 | |
| Cma07g00964 | 364 | PANTHER | WAT1-RELATED PROTEIN | 9 | 337 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00964 | Cma-Chr7:4659149 | Cma09g00799 | Cma-Chr9:3899192 | 5.97E-132 | dispersed | |
| Cma15g00409 | Cma-Chr15:1834809 | Cma07g00964 | Cma-Chr7:4659149 | 4.08E-136 | wgd | |
| Cma03g00442 | Cma-Chr3:4615905 | Cma07g00964 | Cma-Chr7:4659149 | 0 | wgd | |
| Cma04g02624 | Cma-Chr4:17910496 | Cma07g00964 | Cma-Chr7:4659149 | 1.06E-139 | wgd | |
| Cma04g00224 | Cma-Chr4:1085071 | Cma07g00964 | Cma-Chr7:4659149 | 1.57E-140 | wgd | |
| Cma04g01197 | Cma-Chr4:6104958 | Cma07g00964 | Cma-Chr7:4659149 | 1.18E-136 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00964 | - | - | csv:101217902 | 633.639 |