Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00992 ATGGCCGAGAACGAGGACATTCAGCCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCCGTCTTCCCTAGCATTGTTGGTCGTCCCCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCCGAAGAACATCCAGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTGTACGCCAGTGGTCGTACAACCGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACCTGACTGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAACAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTACGAGTTACCCGATGGTCAGGTGATCACCATCGGCAACGAGCGTTTTCGGTGCCCAGAAGTGCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGCGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCGCAGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCACCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGTCCTTCAATTGTCCACAGGAAGTGCTTCTAA 1134 48.06 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGNERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIAALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5110022 5113109 + CmaCh07G009920.1 Cma07g00992 298307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00992 377 Gene3D - 140 340 - -
Cma07g00992 377 SMART actin_3 7 377 IPR004000 -
Cma07g00992 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cma07g00992 377 PANTHER ACTIN 1 376 IPR004000 -
Cma07g00992 377 PANTHER ACTIN-97 1 376 - -
Cma07g00992 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma07g00992 377 PRINTS Actin signature 28 37 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 51 62 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 63 85 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 117 130 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 142 161 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 238 254 IPR004000 -
Cma07g00992 377 Gene3D - 10 371 - -
Cma07g00992 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma07g00992 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma07g00992 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma07g00992 377 Pfam Actin 5 377 IPR004000 -
Cma07g00992 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cma07g00992 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00992 K10355 ACTF; actin, other eukaryote - csv:101214246 743.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00992 Cma-Chr7:5110022 Cma14g00415 Cma-Chr14:1949873 0 dispersed
Cma05g01280 Cma-Chr5:9776841 Cma07g00992 Cma-Chr7:5110022 9.84E-56 transposed
Cma15g00386 Cma-Chr15:1755346 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma02g00806 Cma-Chr2:4772408 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma20g00406 Cma-Chr20:1944722 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma03g00427 Cma-Chr3:4537903 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma04g02644 Cma-Chr4:18005520 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma04g00208 Cma-Chr4:987792 Cma07g00992 Cma-Chr7:5110022 4.86E-16 wgd
Cma04g01178 Cma-Chr4:6002200 Cma07g00992 Cma-Chr7:5110022 4.25E-07 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT2G37620 96.3 7.9e-215 743.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.1e-213 739.6
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT2G37620 96.3 1.5e-213 739.2
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT2G37620 95.8 1.3e-212 736.1
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.8e-212 734.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.8e-212 734.9
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.2 2.8e-212 734.9
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT2G37620 95.5 3.7e-212 734.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.8e-212 734.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.8e-212 734.2
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT2G37620 96.2 2.9e-209 724.9
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT2G37620 93.2 1.9e-200 695.7
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.8 8.7e-214 740.0
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT5G59370 96.3 3.3e-213 738.0
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT5G59370 96.6 4.3e-213 737.6
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT5G59370 96.3 1.6e-212 735.7
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 2.2e-212 735.3
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT5G59370 95.8 3.7e-212 734.6
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 8.2e-212 733.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT5G59370 95.8 5.3e-211 730.7
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.2e-210 729.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-210 729.6
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT5G59370 96.0 7.2e-208 720.3
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT5G59370 94.3 5.9e-202 700.7
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G46520 97.1 3.9e-214 741.1
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G46520 96.6 1.5e-213 739.2
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G46520 96.8 1.9e-213 738.8
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G46520 96.6 7.4e-213 736.9
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 9.7e-213 736.5
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G46520 96.0 1.6e-212 735.7
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 3.7e-212 734.6
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G46520 96.0 2.4e-211 731.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.3e-211 730.7
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 5.3e-211 730.7
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G46520 95.7 2.1e-207 718.8
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G46520 94.6 2.6e-202 701.8
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G12110 96.8 4.6e-215 744.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 3.9e-214 741.1
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G12110 96.8 3.9e-214 741.1
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G12110 96.6 8.7e-214 740.0
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 8.7e-214 740.0
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 8.7e-214 740.0
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G12110 96.6 1.1e-213 739.6
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.3e-213 737.6
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.7e-212 734.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 8.2e-212 733.4
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G12110 96.0 3.8e-209 724.5
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G12110 93.5 2.9e-201 698.4
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.4e-208 722.6
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G18780 92.0 3.2e-208 721.5
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G18780 91.8 5.5e-208 720.7
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G18780 91.8 7.2e-208 720.3
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G18780 91.8 9.4e-208 719.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.6e-207 719.2
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.6e-207 719.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.1e-207 718.8
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.4e-206 716.1
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.2 3.0e-206 714.9
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G18780 91.4 1.2e-202 703.0
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G18780 90.3 1.5e-197 686.0
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT1G49240 92.3 1.1e-208 723.0
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT1G49240 92.0 3.2e-208 721.5
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.5e-208 720.7
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.5e-208 720.7
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 91.8 7.2e-208 720.3
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT1G49240 91.5 1.2e-207 719.5
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 3.0e-206 714.9
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.0 6.7e-206 713.8
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT1G49240 91.1 2.6e-202 701.8
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT1G49240 90.3 1.5e-197 686.0
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.1e-215 743.8
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.9e-214 741.1
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT5G09810 95.2 1.3e-212 736.1
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.5 2.8e-212 734.9
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT5G09810 95.8 4.8e-212 734.2
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT5G09810 95.5 6.3e-212 733.8
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.2e-212 733.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 1.4e-211 732.6
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.0 4.1e-211 731.1
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT5G09810 95.1 1.2e-207 719.5
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT5G09810 93.0 5.5e-200 694.1
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 76.3 3.1e-57 218.4
Cma12g01274 . 162 292 Cytoskeleton Gene Families AT2G19760 77.1 3.1e-57 218.4
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.4e-56 214.9
Cma08g00743 CCT,CST,ECH 135 264 Cytoskeleton Gene Families AT2G19760 73.8 1.7e-55 212.6
Cma14g01287 . 1077 1205 Cytoskeleton Gene Families AT2G19760 73.6 5.5e-54 207.6
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT2G19760 71.1 2.0e-48 189.1
Cma01g00091 CCT,ECH 1 179 Cytoskeleton Gene Families AT2G19760 52.5 5.5e-46 181.0
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 9.0e-57 216.9
Cma12g01274 . 162 292 Cytoskeleton Gene Families AT4G29350 76.3 2.6e-56 215.3
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.4e-54 209.5
Cma08g00743 CCT,CST,ECH 135 263 Cytoskeleton Gene Families AT4G29350 72.9 1.2e-53 206.5
Cma14g01287 . 1077 1207 Cytoskeleton Gene Families AT4G29350 71.8 1.3e-52 203.0
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT4G29350 70.3 4.9e-47 184.5
Cma01g00091 CCT,ECH 1 181 Cytoskeleton Gene Families AT4G29350 50.3 2.3e-44 175.6
Cma12g01274 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 5.9e-64 240.7
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 3.9e-63 238.0
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 4.4e-59 224.6
Cma08g00743 CCT,CST,ECH 135 263 Cytoskeleton Gene Families AT4G29340 76.5 1.4e-57 219.5
Cma14g01287 . 1077 1207 Cytoskeleton Gene Families AT4G29340 70.1 1.1e-52 203.4
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT4G29340 64.9 1.9e-46 182.6
Cma01g00091 CCT,ECH 1 181 Cytoskeleton Gene Families AT4G29340 51.1 5.6e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00992 Cma_Chr07 FPKM 5.126043 5.614744 1.747394 1.261111 3.776545 5.105063 3.90549 0.237039 0.168382 0.248366