Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00992 ATGGCCGAGAACGAGGACATTCAGCCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCCGTCTTCCCTAGCATTGTTGGTCGTCCCCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCCGAAGAACATCCAGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTGTACGCCAGTGGTCGTACAACCGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACCTGACTGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAACAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTACGAGTTACCCGATGGTCAGGTGATCACCATCGGCAACGAGCGTTTTCGGTGCCCAGAAGTGCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGCGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCGCAGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCACCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGTCCTTCAATTGTCCACAGGAAGTGCTTCTAA 1134 48.06 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGNERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIAALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5110022 5113109 + CmaCh07G009920.1 Cma07g00992 298307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00992 377 Gene3D - 140 340 - -
Cma07g00992 377 SMART actin_3 7 377 IPR004000 -
Cma07g00992 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cma07g00992 377 PANTHER ACTIN 1 376 IPR004000 -
Cma07g00992 377 PANTHER ACTIN-97 1 376 - -
Cma07g00992 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma07g00992 377 PRINTS Actin signature 28 37 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 51 62 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 63 85 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 117 130 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 142 161 IPR004000 -
Cma07g00992 377 PRINTS Actin signature 238 254 IPR004000 -
Cma07g00992 377 Gene3D - 10 371 - -
Cma07g00992 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma07g00992 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma07g00992 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma07g00992 377 Pfam Actin 5 377 IPR004000 -
Cma07g00992 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cma07g00992 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00992 Cma-Chr7:5110022 Cma14g00415 Cma-Chr14:1949873 0 dispersed
Cma05g01280 Cma-Chr5:9776841 Cma07g00992 Cma-Chr7:5110022 9.84E-56 transposed
Cma15g00386 Cma-Chr15:1755346 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma02g00806 Cma-Chr2:4772408 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma20g00406 Cma-Chr20:1944722 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma03g00427 Cma-Chr3:4537903 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma04g02644 Cma-Chr4:18005520 Cma07g00992 Cma-Chr7:5110022 0 wgd
Cma04g00208 Cma-Chr4:987792 Cma07g00992 Cma-Chr7:5110022 4.86E-16 wgd
Cma04g01178 Cma-Chr4:6002200 Cma07g00992 Cma-Chr7:5110022 4.25E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00992 K10355 - csv:101214246 743.806