Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00992 | ATGGCCGAGAACGAGGACATTCAGCCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCCGTCTTCCCTAGCATTGTTGGTCGTCCCCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCCGAAGAACATCCAGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTGTACGCCAGTGGTCGTACAACCGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACCTGACTGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAACAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTACGAGTTACCCGATGGTCAGGTGATCACCATCGGCAACGAGCGTTTTCGGTGCCCAGAAGTGCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGCGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCGCAGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCACCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGTCCTTCAATTGTCCACAGGAAGTGCTTCTAA | 1134 | 48.06 | MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGNERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIAALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5110022 | 5113109 | + | CmaCh07G009920.1 | Cma07g00992 | 298307 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00992 | 377 | Gene3D | - | 140 | 340 | - | - | |
Cma07g00992 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
Cma07g00992 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
Cma07g00992 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
Cma07g00992 | 377 | PANTHER | ACTIN-97 | 1 | 376 | - | - | |
Cma07g00992 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Cma07g00992 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Cma07g00992 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Cma07g00992 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Cma07g00992 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Cma07g00992 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Cma07g00992 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Cma07g00992 | 377 | Gene3D | - | 10 | 371 | - | - | |
Cma07g00992 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Cma07g00992 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
Cma07g00992 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Cma07g00992 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
Cma07g00992 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
Cma07g00992 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00992 | Cma-Chr7:5110022 | Cma14g00415 | Cma-Chr14:1949873 | 0 | dispersed | |
Cma05g01280 | Cma-Chr5:9776841 | Cma07g00992 | Cma-Chr7:5110022 | 9.84E-56 | transposed | |
Cma15g00386 | Cma-Chr15:1755346 | Cma07g00992 | Cma-Chr7:5110022 | 0 | wgd | |
Cma02g00806 | Cma-Chr2:4772408 | Cma07g00992 | Cma-Chr7:5110022 | 0 | wgd | |
Cma20g00406 | Cma-Chr20:1944722 | Cma07g00992 | Cma-Chr7:5110022 | 0 | wgd | |
Cma03g00427 | Cma-Chr3:4537903 | Cma07g00992 | Cma-Chr7:5110022 | 0 | wgd | |
Cma04g02644 | Cma-Chr4:18005520 | Cma07g00992 | Cma-Chr7:5110022 | 0 | wgd | |
Cma04g00208 | Cma-Chr4:987792 | Cma07g00992 | Cma-Chr7:5110022 | 4.86E-16 | wgd | |
Cma04g01178 | Cma-Chr4:6002200 | Cma07g00992 | Cma-Chr7:5110022 | 4.25E-07 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00992 | K10355 | - | csv:101214246 | 743.806 |