Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00996 ATGGGAAATCGAATTGGGAAAATTGGCCGCTGTTTCGCCGGCGACGGTGATATCTCCCGCCGGTATGATCCCGCCGACATTATTGTCGACCCTCATGATGGCGGTTTCGGCCACTCCTTCTATTATCTCCCACCCGACCCACATACTATCTCCTCTTCTAAAGATTTCTCCGACGAGTACATCTCTCCGGCAACCACCATTTTTCGGTCGATTTCCGGCGCTTCTGTAAGCGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTTGATCTCTATCCTTACAGCACCACGTTTGATCGGGCCGCTGCTTTTGATTGCTCGAATTCCTTCGCCTCCGTGCCGTTGCAGCCGGTGCCTCGCCACTCGGTGTCGGGAAATTCCGGCGGATTCCCTTATTCGGGTCCGATTGAGAGAGGGTTTTTATCCGGACCCTTAGCCAGCCGGAACGAATCGGGTCCTATTGATCGTGGGGTTTGTTCCGGCCCTATTGAAAAGAGCGGCGTTGGACCCGAGAAATTACGGCGGAGCTTCTCTCACAGCGGCGTTGGAGATAGACAACCCAAATCGAAAAGAAGAAGTCTCATTCGGATTCTGAAGAAAGCCATATCCAAAACCATTTCTCGAAACCAAAAGGCTGTGAGTTCGAGAGTGAGAGAATCGGAATCATACAAACACAATGAAAATGCTGCAGCTACTCAGACTCAAAGCAGTGTCCATTTGAGCAGCCATGCGAGCTTGGCGCCGGAAGACGACGGCGATTACTTTCTCGGCGGCCAGAGCGTACAGTGGGCACAGGGGAAGGCCGGTGAGGACAGAGTTCATGTGGTGATTTCCGAGGACAATGGTTGGGTTTTCGTCGGAATTTACGACGGATTCAACGGCCCTGATGCTCCTGATTACTTACTCGCTAATCTCTATGCTGCCGTTCTAAGAGAACTCAAGGGATTAATTTGGAGTGATAAGTTTGATTCAACTGCAACTTCGTCTTCCGTGAACTCATCAAACTCTGCTTCAATTGAGGAAGATGACGGAACAACCCACCTGAAAAATCATCAATCTACAGAGAATTTCCCTGCGGGAAATAAGATGGTGAATTTGGAAGCTGAATCGATGAGGAAAAGAGAGAGAGTTTATAATACAAACTACAGGACGAGTCAGCTGATGAAGAGGGCTGATCAGAATCCCAAGACTTGGAAATGTGAATGGGAAAGGGAAAGATTAGAATTCGACGGGAAGATGAACAATAAACAATTAGATCATCATCACCAAATATGGGATGAATCAACAGCAATCAATCATTCTGAAGTGTTAAATGCTCTGTCTCAAGCATTGAGAAAAACAGAGGAAGCATATCTACAAAATGCAGACAAGATGGTTACAAGAAACCCTGAGCTAGCTCTTATGGGTTCTTGTGTTTTGGTCATGTTGATGAGAGGAGAAGATGTGTACTTGATGAATGTCGGAGACAGCCGTGCTATTGTAGCGCAGCAACTCGAACCGGATTTCGGGATTGGAAAGCAATACAGAGACTTGGAGAGAATCAATGAAGGAACACTACGAGTATTTGAATCTTCTAATGGTGTGGAGTTCGAAAGGTTAACAACCTTAGCCTCCCATCAGCTTACAATGGACCACAGCACCTACACAGAGGAGGAAGTCCAGAGGATCAAGAAGGCTCATCCCAACGATGCTTCAGCAATTATGAACGACAGGGTGAAAGGTTATTTGAAAATTACTCGGGCTTTTGGAGCTGGCTTTCTCAAACAGCCAAAGTGGAATGATGCACTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACACTCTGCCATTACAAACTCAGCCCAACAGACAGATTCTTGATACTATCCTCTGATGGACTCTACCAGTACTTCACCAACGAAGAAGCTGTTTCTCAAGTAGAGTCCTTCATTGCTGCTTTTCCTGAAGGAGATCCTGCTCAACATCTAATTGAAGAAGTACTGTTCCGAGCAGCGAAAAAATACGGAATGGACTTCCATGAGCTGCTCGACATCCCACAAGGGGAGCGGCGGAAGTACCATGACGATGTTTCGGTAATCATCATTTCATTCGAAGGGAGAATCTGGCATTCATTGATGTAA 2148 46.83 MGNRIGKIGRCFAGDGDISRRYDPADIIVDPHDGGFGHSFYYLPPDPHTISSSKDFSDEYISPATTIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRHSVSGNSGGFPYSGPIERGFLSGPLASRNESGPIDRGVCSGPIEKSGVGPEKLRRSFSHSGVGDRQPKSKRRSLIRILKKAISKTISRNQKAVSSRVRESESYKHNENAAATQTQSSVHLSSHASLAPEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYAAVLRELKGLIWSDKFDSTATSSSVNSSNSASIEEDDGTTHLKNHQSTENFPAGNKMVNLEAESMRKRERVYNTNYRTSQLMKRADQNPKTWKCEWERERLEFDGKMNNKQLDHHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQLEPDFGIGKQYRDLERINEGTLRVFESSNGVEFERLTTLASHQLTMDHSTYTEEEVQRIKKAHPNDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYFTNEEAVSQVESFIAAFPEGDPAQHLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVIIISFEGRIWHSLM 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5127919 5130777 - CmaCh07G009960.1 Cma07g00996 298311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00996 715 Pfam Protein phosphatase 2C 420 677 IPR001932 -
Cma07g00996 715 MobiDBLite consensus disorder prediction 151 191 - -
Cma07g00996 715 MobiDBLite consensus disorder prediction 324 341 - -
Cma07g00996 715 SMART PP2C_4 244 704 IPR001932 -
Cma07g00996 715 Gene3D - 221 711 IPR036457 -
Cma07g00996 715 MobiDBLite consensus disorder prediction 324 361 - -
Cma07g00996 715 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 21 713 - -
Cma07g00996 715 SUPERFAMILY PP2C-like 266 707 IPR036457 -
Cma07g00996 715 CDD PP2Cc 409 706 IPR001932 -
Cma07g00996 715 MobiDBLite consensus disorder prediction 209 243 - -
Cma07g00996 715 PANTHER PROTEIN PHOSPHATASE 2C 21 713 IPR015655 GO:0004722|GO:0006470
Cma07g00996 715 ProSiteProfiles PPM-type phosphatase domain profile. 255 706 IPR001932 -
Cma07g00996 715 MobiDBLite consensus disorder prediction 226 243 - -
Cma07g00996 715 MobiDBLite consensus disorder prediction 168 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00425 Cma07g00996 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00996 Cma-Chr7:5127919 Cma16g01071 Cma-Chr16:8200291 5.39E-40 dispersed
Cma02g00802 Cma-Chr2:4762278 Cma07g00996 Cma-Chr7:5127919 0 wgd
Cma20g00405 Cma-Chr20:1941128 Cma07g00996 Cma-Chr7:5127919 0 wgd
Cma03g00425 Cma-Chr3:4535391 Cma07g00996 Cma-Chr7:5127919 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00996 - - bhj:120069881 1269.99