Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00999 ATGCCTATGCCTCTGGGTATGCAGTGGATTTGGACTTTGATTCCCATTCCTTCACTGTTCTCATCACCCCATAAGTACCCCTTCCTCTTCCTCCCCTTTTCCATTCTCCTCTGCTCTTCTTCCGCCATGGCTTCTTTCTCTCTCCTCTGCATTTTTTCTTCTCTCTCCTCCCTCTTCCTCCTCTCCCACGCCAGAATCCCCGGCTCCTACTCCGGCGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACTATGGGCGGCGCGTGTGGGTACGGGAATCTGTACAGTCAGGGCTACGGCGTCAACACGGCGGCGCTAAGTACGGCTCTGTTCAACAATGGCTTTAGCTGCGGCGCTTGCTTTGAGATCAAGTGCGTTAATGATCCCCAATGGTGCCATTCCGGTAGCCCTTCTATTTTCATTACAGCTACCAATTTCTGTCCCCCCAATTTTGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCCCGCACTCATTTTGACCTCGCCATGCCTATGTTCCTCAAGATCGCCGAGTACCGTGCCGGAATCGTCCCCGTCGCTTACCGCCGGGTGCCATGTAGAAAACAAGGCGGAATCCGGTTCACAATTAACGGTTTCCGTTACTTCAACTTGGTTTTAATCACGAACGTCGCGGGTGCAGGGGATATCGTGAGGGTGAGTGTGAAAGGATCGAGTACGGGTTGGATGAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAATGCTATTTTGGTGGGCCAGAGTGTTTCCTTCCGGGTCACGGGCAGTGACCGTCGTACCTCAACCTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGCCAGACCTTCACGGGAAAGAATTTCCACGTCTGA 906 54.53 MPMPLGMQWIWTLIPIPSLFSSPHKYPFLFLPFSILLCSSSAMASFSLLCIFSSLSSLFLLSHARIPGSYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCVNDPQWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSSTGWMSMSRNWGQNWQSNAILVGQSVSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFHV 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5154276 5155847 - CmaCh07G009990.1 Cma07g00999 298314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00999 301 Gene3D - 62 203 IPR036908 -
Cma07g00999 301 PRINTS Expansin/Lol pI family signature 190 206 IPR007118 GO:0005576
Cma07g00999 301 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Cma07g00999 301 PRINTS Expansin/Lol pI family signature 74 89 IPR007118 GO:0005576
Cma07g00999 301 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Cma07g00999 301 PRINTS Expansin/Lol pI family signature 114 132 IPR007118 GO:0005576
Cma07g00999 301 PRINTS Expansin/Lol pI family signature 282 296 IPR007118 GO:0005576
Cma07g00999 301 SMART dpbb_1 110 197 IPR007112 -
Cma07g00999 301 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 132 143 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 105 119 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 282 298 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 146 156 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 182 195 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 165 182 IPR002963 GO:0009664
Cma07g00999 301 PRINTS Expansin signature 206 218 IPR002963 GO:0009664
Cma07g00999 301 PANTHER EXPANSIN-A15 43 300 IPR002963 GO:0009664
Cma07g00999 301 SUPERFAMILY PHL pollen allergen 204 296 IPR036749 -
Cma07g00999 301 Pfam Lytic transglycolase 110 197 IPR009009 -
Cma07g00999 301 Pfam Expansin C-terminal domain 208 285 IPR007117 -
Cma07g00999 301 SUPERFAMILY Barwin-like endoglucanases 74 225 IPR036908 -
Cma07g00999 301 PANTHER EXPANSIN 43 300 - -
Cma07g00999 301 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 93 207 IPR007112 -
Cma07g00999 301 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 217 296 IPR007117 -
Cma07g00999 301 Gene3D - 207 299 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00422 Cma07g00999 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01195 Cma-Chr3:7980661 Cma07g00999 Cma-Chr7:5154276 3.65E-102 dispersed
Cma04g00211 Cma-Chr4:1005461 Cma07g00999 Cma-Chr7:5154276 1.14E-164 dispersed
Cma04g01180 Cma-Chr4:6015443 Cma07g00999 Cma-Chr7:5154276 1.74E-143 dispersed
Cma07g00999 Cma-Chr7:5154276 Cma04g01668 Cma-Chr4:8389926 1.51E-124 dispersed
Cma01g00609 Cma-Chr1:3176629 Cma07g00999 Cma-Chr7:5154276 2.33E-163 wgd
Cma13g00123 Cma-Chr13:843427 Cma07g00999 Cma-Chr7:5154276 3.42E-163 wgd
Cma02g00797 Cma-Chr2:4725802 Cma07g00999 Cma-Chr7:5154276 1.40E-165 wgd
Cma20g00396 Cma-Chr20:1904421 Cma07g00999 Cma-Chr7:5154276 5.33E-166 wgd
Cma03g00422 Cma-Chr3:4515929 Cma07g00999 Cma-Chr7:5154276 3.26E-167 wgd
Cma04g02655 Cma-Chr4:18055290 Cma07g00999 Cma-Chr7:5154276 2.62E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00999 - - csv:101212872 506.138