Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01010 ATGGAAACCAATCTTCCCCTTCTCTTTCTTCTCATTTTACTCTCAATCTTCCTCTCCTGCACCGCCAAGCGCTGCCCGGACTGCGGCCGCACGCCGGTGCCGTACCCACTCAGCACACGCCCAGATTGCGGTGATCCTCTTTACAGAGTTCGGTGCACCGCCGGCGTGCTCTGGTTCGAGTCCGTCAATGGGTCTTCCTATTTGATCACTTCCGTTAATCCGGTGGCCCAGAGGTTGATTATCCGGCCGCCGGGGTTGGCGAAAAACACCTGCGTTTCATCGGATTTTGGGAGCCATGGATTTTGGCTCGACATCGGCCATCCTTTCACCATTACCAATAGAAACACGGTTCTACTCTTCAATTGTTCGATGGAAGTCCTGGAAAATAGTTGGAACTGTTCGGCTAACAGCGTCTGTCATGACTACATCAAGCAGAATCCGGTGGTCATGGGGGCGTGTAAGGCGGCGCCGACGTGCTGTTGGTATACAAGTGGAGGGTCCATTACTGAGTACAGAATCAGGGTGCGGAAGGAGCGGTGTTCGGCTTATGAATGCTTTGTGAATTTGGGTGGTTCTGTTCCGGCGAAGAAGAAATGGCCAGAACCTGGGGTGGAGATTCAATGGGCACCTCCGCGAGAGCCGCCGTGTCGAGTGGCTGCAGACTGCCGGAATTGGGAGAATTCTGCTTGTTTGCCGGAACCTGCAAATGCTCGCCAGATGAGGTGCTTCTGCAAGGTGCCTTTCAAGTGGGATCCTGTTAATGGCTTGTGTAATGGCAACAATGTGAAAATACAGAACAAGAGAATTCACAAGAAGCATAAGAAGATGCCTGCTATTCTTGGAGCAATGGCTGGAGTGATCGTCGTGGTGATTGGAGGCTCGACCATGTTTATAATTTTCAAAAGACGTCAACAGATTCCGAAAGGGAACGAACTCAATTCGAAACAAGTTCGTGAAGTGATTCTAACAGCCAACAGCAGTGGCAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCGAAAGAGAACTTGCTTGGCTCTGGTGGCTATGGAGAGGTTTTCAAAGGCAGCTTAGAAGATGGAACCTTAGTAGCTGTTAAGCGCGCCAAGTTGGGGTGCATGAAGGGTATCGATCAAATCTTGAACGAAGTTCGAATTCTTTGTCAGGTGAACCATCGATGCCTTGTTCGTCTACTTGGATGCTGCCTCGAACTCGAGCAACCCCTGCTAATATATGAATACATCTCAAATGGGAACCTATTCGATCACCTTCATGGCAATACAAGTTCAAGTAAATGGCCACCGCTGACATTGAGTCGTCGACTCTACATTGCTCGCCAAACAGCTGATGGCCTTGCTTATCTACACACTTCAGCCATGCCAAGAATCTATCACCGAGATATAAAGTCAAGCAATATTCTACTAGACGAGAAGTTGAATGCTAAAGTTGCCGATTTCGGGCTTTCTAGACTGGCCGTTACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTAGACCCGGAATATTACTTAAACTTTCAATTGACAGACAAGAGCGATGTTTATAGTTTTGGAGTTGTCATGCTCGAGCTGTTGACTTCTGAGAAAGCCATTGATTTTAACAGAGAAGAGGAAGATGTAAACTTAGTAGTTTATATCAAGAAGATTATCAAAGAAGACAGATTGATGGAAGTTGTTGATCCTGTGATCAAACAGAGAGCAAGCAGAGTTCAAATAGAGATAATGAAGGCATTAGGGTCTCTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAAAACAGACCTACAATGAAAGAAGTTGCTGATGAGCTAGCCAACATTATTTGTGTTCTTAACAGAGAGATTCCAAATATTGACGAACTGTAA 1920 46.72 METNLPLLFLLILLSIFLSCTAKRCPDCGRTPVPYPLSTRPDCGDPLYRVRCTAGVLWFESVNGSSYLITSVNPVAQRLIIRPPGLAKNTCVSSDFGSHGFWLDIGHPFTITNRNTVLLFNCSMEVLENSWNCSANSVCHDYIKQNPVVMGACKAAPTCCWYTSGGSITEYRIRVRKERCSAYECFVNLGGSVPAKKKWPEPGVEIQWAPPREPPCRVAADCRNWENSACLPEPANARQMRCFCKVPFKWDPVNGLCNGNNVKIQNKRIHKKHKKMPAILGAMAGVIVVVIGGSTMFIIFKRRQQIPKGNELNSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGSLEDGTLVAVKRAKLGCMKGIDQILNEVRILCQVNHRCLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLYIARQTADGLAYLHTSAMPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAVTESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIKEDRLMEVVDPVIKQRASRVQIEIMKALGSLAAACLDEKRQNRPTMKEVADELANIICVLNREIPNIDEL 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5236317 5238428 + CmaCh07G010100.1 Cma07g01010 298325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01010 639 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Cma07g01010 639 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Cma07g01010 639 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01010 639 SUPERFAMILY Protein kinase-like (PK-like) 329 622 IPR011009 -
Cma07g01010 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 628 IPR045274 GO:0007166
Cma07g01010 639 Pfam Protein tyrosine and serine/threonine kinase 349 622 IPR001245 GO:0004672|GO:0006468
Cma07g01010 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cma07g01010 639 SMART serkin_6 346 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01010 639 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cma07g01010 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 24 628 - -
Cma07g01010 639 CDD STKc_IRAK 352 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00427 Cma-Chr6:1967253 Cma07g01010 Cma-Chr7:5236317 1.36E-180 dispersed
Cma07g01010 Cma-Chr7:5236317 Cma12g00502 Cma-Chr12:2602510 4.15E-87 dispersed
Cma15g00643 Cma-Chr15:3040061 Cma07g01010 Cma-Chr7:5236317 8.06E-77 dispersed
Cma15g00109 Cma-Chr15:493811 Cma07g01010 Cma-Chr7:5236317 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68712 PF07714 PK_Tyr_Ser-Thr 3.50E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01010 - - csv:101204219 1119.38