Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01029 ATGGCTGAAGAAGAAGTACAAGTGTTTGGCTTCCGGTCAGGCCCCTTCAGCCTCAGAGTGGAGTTGGCTCTCAAACTCAAAGCCGTGGATTACCAACACATTGAAGAAGATTTGCTTAACAACAAAAGTGATTTGCTTCTCAAATACAACCCAATCTACAAGAAGGTGCCTGTTCTTGTGCACAATGGCAACCCCATTTCGGAGTCACTCGTCATCCTTGAGTACATCGAACATAACTGGACGCACAATCCCATCTTCCCCGCACATCCCTACGATCGAGCTCTCGCCAGGTTTTGGGCCAAATTCATCGATGACACGGTTGTGCCTGCGGTGCATAAAATTTCTGGAAGCACAGAAGAAGAGAGAGAGAAAGCCATAGAAGAAGCTCAGAAGACCTTGGAACCATTAGAGAATGAGCTTGGAAACAAGAAGTTCTTCGGAGGAGAGGAAATTGGGTTGGTGGACATTGTAGGACTTATTTTGGCCGGGTGGATTCCTGCCATTGAAGAAGCTTTAGGATTTGAGCTGCTCAATACCCACAAGCTTCCAAACCTGAAAAAATGGACTGAAGAGTTCGTGAACCACCGTGTGGCCAAGCAGGTTATGCCTCAAAAGGATGCTCTTGTTGCCTTTCTAAAAAATGTTGTGCTGAATCGAAAAAATTAG 666 45.8 MAEEEVQVFGFRSGPFSLRVELALKLKAVDYQHIEEDLLNNKSDLLLKYNPIYKKVPVLVHNGNPISESLVILEYIEHNWTHNPIFPAHPYDRALARFWAKFIDDTVVPAVHKISGSTEEEREKAIEEAQKTLEPLENELGNKKFFGGEEIGLVDIVGLILAGWIPAIEEALGFELLNTHKLPNLKKWTEEFVNHRVAKQVMPQKDALVAFLKNVVLNRKN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5368867 5369711 - CmaCh07G010290.1 Cma07g01029 298344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01029 221 CDD GST_C_Tau 90 213 IPR045074 GO:0004364|GO:0006749
Cma07g01029 221 Gene3D Glutaredoxin 1 85 - -
Cma07g01029 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 209 IPR010987 -
Cma07g01029 221 CDD GST_N_Tau 6 80 - -
Cma07g01029 221 SFLD Glutathione Transferase (cytosolic) 1 215 IPR040079 -
Cma07g01029 221 Gene3D - 86 220 - -
Cma07g01029 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 3 217 IPR045073 -
Cma07g01029 221 Coils Coil 119 139 - -
Cma07g01029 221 SUPERFAMILY GST C-terminal domain-like 79 214 IPR036282 -
Cma07g01029 221 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 3 217 - -
Cma07g01029 221 SFLD Main.3: Omega- and Tau-like 1 215 IPR045073 -
Cma07g01029 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Cma07g01029 221 Pfam Glutathione S-transferase, C-terminal domain 98 194 IPR004046 -
Cma07g01029 221 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Cma07g01029 221 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00383 Cma-Chr3:4364137 Cma07g01029 Cma-Chr7:5368867 8.61E-94 dispersed
Cma03g00384 Cma-Chr3:4366133 Cma07g01029 Cma-Chr7:5368867 2.96E-90 dispersed
Cma07g01029 Cma-Chr7:5368867 Cma07g01031 Cma-Chr7:5378533 4.86E-113 dispersed
Cma07g01028 Cma-Chr7:5365494 Cma07g01029 Cma-Chr7:5368867 5.91E-71 tandem
Cma07g01029 Cma-Chr7:5368867 Cma07g01030 Cma-Chr7:5377735 7.93E-29 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01029 K00799 - csv:101215228 319.316