Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01034 ATGGCGGCTTTGGAGACAGCCGGAGTAGATTTGGAGGAAGGGGGTCGTGGTGGTGACGGCGGACGGCGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTATTGTACAAAATGTAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTAAACAATGGGACGCTATCGACTACCACGGTGGCTGCTGCTTCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGCGTCCTGAATTTTTTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTTCATTTCAATATGCGGTCATAA 480 47.5 MAALETAGVDLEEGGRGGDGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHELNNGTLSTTTVAAASDGGRRFWQVHRVLNFFLACIVFAFVISWLFHFNMRS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5397563 5398623 - CmaCh07G010340.1 Cma07g01034 298349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01034 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Cma07g01034 159 PANTHER OS01G0850200 PROTEIN 28 158 - -
Cma07g01034 159 Pfam RING-variant domain 37 88 IPR011016 GO:0008270
Cma07g01034 159 SUPERFAMILY RING/U-box 33 92 - -
Cma07g01034 159 MobiDBLite consensus disorder prediction 1 27 - -
Cma07g01034 159 SMART ringv_2 36 89 IPR011016 GO:0008270
Cma07g01034 159 CDD RING_CH-C4HC3_MARCH 37 89 - -
Cma07g01034 159 ProSiteProfiles Zinc finger RING-CH-type profile. 29 95 IPR011016 GO:0008270
Cma07g01034 159 PANTHER ZINC FINGER, RING-CH-TYPE 28 158 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g01034 Cma14g00100 CCT
Cma06g00260 Cma07g01034 CCT
Cma06g00260 Cma07g01034 ECH
Cma07g01034 Cma14g00100 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01034 Cma-Chr7:5397563 Cma11g01899 Cma-Chr11:12587588 8.96E-19 dispersed
Cma13g00092 Cma-Chr13:684315 Cma07g01034 Cma-Chr7:5397563 2.85E-22 wgd
Cma14g00100 Cma-Chr14:436891 Cma07g01034 Cma-Chr7:5397563 6.84E-59 wgd
Cma15g00118 Cma-Chr15:544739 Cma07g01034 Cma-Chr7:5397563 7.83E-31 wgd
Cma04g02928 Cma-Chr4:19321576 Cma07g01034 Cma-Chr7:5397563 6.96E-54 wgd
Cma06g00260 Cma-Chr6:1296853 Cma07g01034 Cma-Chr7:5397563 5.30E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01034 - - mcha:111019441 216.853