Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g01054 | ATGCTGTCATTTCTGTGCCATTTATTGCCGTTATTCTTTGGGTACGCCGCCACCACCTCCACCGTTGCAGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATCGTTATGCTCTCGGCTTACATTGCTTACTTGGTCTTCCAACTCTGGACTCACCGCCAATTATTTGAAGCCCAGGAGGATGAAAACGACGACGTACCAGTAGAAGAGGCAGTTATTGGATTCTGGAGTGCATTTGCATGGCTTGTAGGAATGACACTCCTGAATGCTTTGCTGTCGGAATACGTGTCAACACAATTGAGTTTGGGGGTTGCTTTGGGGTCAGCAACACAAATTGCACTTTTTGTGATTCCAATGTGTGTGATCGTTGCTTGGACAATGGGAGTGGATATGGATCTAAATTTCAACCTCATGGAAACGGCGTCGCTTGGATTAGCCATTATTACCACAGCCTTCGCCTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTGTTATGCTATGTTATTACTGCGGCTTGTTTCTTTGTCTCCAACGCTCTTCGAAATTGGTAA | 570 | 47.02 | MLSFLCHLLPLFFGYAATTSTVAAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAQEDENDDVPVEEAVIGFWSAFAWLVGMTLLNALLSEYVSTQLSLGVALGSATQIALFVIPMCVIVAWTMGVDMDLNFNLMETASLGLAIITTAFALQDGTSHYIKGLVLLLCYVITAACFFVSNALRNW | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5607832 | 5609644 | - | CmaCh07G010540.1 | Cma07g01054 | 298369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g01054 | 189 | Pfam | Sodium/calcium exchanger protein | 97 | 178 | IPR004837 | GO:0016021|GO:0055085 | |
| Cma07g01054 | 189 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER 3 | 102 | 186 | - | - | |
| Cma07g01054 | 189 | Gene3D | - | 2 | 182 | IPR044880 | - | |
| Cma07g01054 | 189 | PANTHER | VACUOLAR CATION/PROTON EXCHANGER 3 | 1 | 99 | - | - | |
| Cma07g01054 | 189 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 102 | 186 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 | |
| Cma07g01054 | 189 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 1 | 99 | IPR004713 | GO:0006812|GO:0008324|GO:0016021 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma03g00349 | Cma07g01054 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g01054 | Cma-Chr7:5607832 | Cma20g00699 | Cma-Chr20:3216684 | 1.14E-41 | dispersed | |
| Cma01g00661 | Cma-Chr1:3455404 | Cma07g01054 | Cma-Chr7:5607832 | 9.56E-31 | wgd | |
| Cma03g00349 | Cma-Chr3:4186538 | Cma07g01054 | Cma-Chr7:5607832 | 1.50E-90 | wgd | |
| Cma06g00231 | Cma-Chr6:1173067 | Cma07g01054 | Cma-Chr7:5607832 | 2.00E-46 | wgd | |
| Cma06g00231 | Cma-Chr6:1173067 | Cma07g01054 | Cma-Chr7:5607832 | 2.00E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g01054 | K07300 | - | csv:101213857 | 288.115 |