Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01099 ATGAGGGAAGAACATTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCAGATGAACTCATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTAGCTTTCGATATTCAAAATCCCACCAATTGCAGTCCGCCGTTGCCTTGCCCATCTCCGCCGCTTTCGAATCCCCTACCCGGCTCCGGCAACGGAATTCCGCTGCCCAACTCGGGGGATTTCGGCGATTCCGCCGATTTAGGCTCCGGCGCCGGCAGCGACGAACCAGCCCGGACCCTCAAGCGGCCACGCCTAGTCTGGACTCCACAGCTCCACAAGCGATTCGTTGACGCTGTTGCCCATTTGGGGATAAAAAATGCTGTCCCTAAGACCATAATGCAGCTCATGAGTGTTGATGGCTTAACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGTATGCAGGGTTTATCCAGTGGTGGCGGCGGCGGCGCCGCAGCTGGCTTGGTTGCTTCCTCTGATCCCGCCACCGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCTCGTGCTAGTTCAGACCACTTCATGCCCTTTGTTCCCATGGCCACTCTGCAGCAACACCACCACCACCTGCAGCAGATGGCCGCAGCATCTGCCGTCGCCCACCCTCAGCTCCAGCCCCCCTATCACCGTGGGCAGTTTGGGTCACCATCAAACGGCCAATTTGAGCATCCATTTTTAGGTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAATTCACTTCCTAATTACATTGAGGATTTGGAATCAGGCAATGCCAGTGGTGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 900 54.22 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNCSPPLPCPSPPLSNPLPGSGNGIPLPNSGDFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGAAAGLVASSDPATDHLFASSPVPPHLLHSARASSDHFMPFVPMATLQQHHHHLQQMAAASAVAHPQLQPPYHRGQFGSPSNGQFEHPFLGRQSQPIHRMGAPVHNSLPNYIEDLESGNASGGRKVLTLFPTGDD 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5948982 5949881 - CmaCh07G010990.1 Cma07g01099 298414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01099 299 MobiDBLite consensus disorder prediction 280 299 - -
Cma07g01099 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cma07g01099 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cma07g01099 299 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 299 IPR044841 GO:0003700|GO:0006355
Cma07g01099 299 Gene3D - 94 156 - -
Cma07g01099 299 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 299 - -
Cma07g01099 299 MobiDBLite consensus disorder prediction 47 62 - -
Cma07g01099 299 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cma07g01099 299 MobiDBLite consensus disorder prediction 47 96 - -
Cma07g01099 299 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00034 Cma-Chr6:206551 Cma07g01099 Cma-Chr7:5948982 5.39E-113 dispersed
Cma07g01099 Cma-Chr7:5948982 Cma14g00494 Cma-Chr14:2422084 3.39E-116 dispersed
Cma07g01099 Cma-Chr7:5948982 Cma03g00158 Cma-Chr3:2122692 7.41E-159 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35433 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01099 - - csv:101216969 479.944