Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g01100 | ATGGCTACAAGACCAGTAGTTCCTCAACAAATCAGAGGTGAAGCGGCGATTGGAGGAGGAAAGCAGGGGAAGGGCGGGGCGGCGGTGGATGCGAGGAACCGCAGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAAGGCTAATCGCCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCTCAAGCGGCTGCAAAAGCTGAAAATAATATGAAACAAGTGCCTGTTAAAGTAGATGGGGCTGCTCCCATTCTTGATGGTGGTGTTGTGGCCGTTAAGAAACCAGGAGCTCCCAAAGCAGCAACAAAGAAGGTTGTTTCCAAACCGAAAGCGGAGGTGATCGAGATAAGCCCGGATAAGGAAGAACAAGATCGGGGCAAGGAAGTCAAATGTGGTAACAAGAAAAAGGAAGAAGGGGTCTCAAAGAAGAAGGCACAGACTCTCACCGCAGTCCTGACAGCTAGAAGCAAGGCTGCTTGTGGAGTAACCAAGAAACCAAAGGAACAGATATTTGACATTGACGCAGCAGATGTTGGAAATGAGTTGGCAGAAGTGGAATATGTTGAGGACATTTATAAGTTCTATAAGGAAGTTGAGCATGAGAGTAGGCCTCATGACTATATGGACTCACAACCGGAGATAAACACTTCAATGAGAGCAATATTGGTGGATTGGTTAGTTGATGTCCACAACAAGTTCGAGCTTTCCCCTGAAACATTCTACCTCACCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTTCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCACCAGAGGTAAATGACTTCGTGTGCCTTTCCGATAGAGCGTACACGAATGAACAGATACTAATGATGGAGAAAAGGATACTTGGGAAGCTTGAATGGACCATGACTTTGCCTACTCCCTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGTATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCTGGTTGGGACGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTAATTGATTGTGCAAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAATACTCCAGCTCCGAGAGGGGAGCGGTGGCGTTACTTCAGCCACCCAAAGCTCCCTTGGTGGTGCCTCCTAATGGTCATTGA | 1368 | 47.51 | MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNMKQVPVKVDGAAPILDGGVVAVKKPGAPKAATKKVVSKPKAEVIEISPDKEEQDRGKEVKCGNKKKEEGVSKKKAQTLTAVLTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDIYKFYKEVEHESRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILMMEKRILGKLEWTMTLPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKAPGWDETLKLHTGFTEPQLIDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKAPLVVPPNGH | 455 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5953674 | 5955809 | - | CmaCh07G011000.1 | Cma07g01100 | 298415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g01100 | 455 | Gene3D | - | 212 | 323 | - | - | |
Cma07g01100 | 455 | CDD | CYCLIN | 323 | 412 | IPR013763 | - | |
Cma07g01100 | 455 | SMART | cyclin_7 | 232 | 316 | IPR013763 | - | |
Cma07g01100 | 455 | SMART | cyclin_7 | 329 | 413 | IPR013763 | - | |
Cma07g01100 | 455 | SMART | Cyclin_C_2 | 325 | 444 | IPR004367 | - | |
Cma07g01100 | 455 | PANTHER | CYCLINS | 21 | 449 | IPR039361 | - | |
Cma07g01100 | 455 | SUPERFAMILY | Cyclin-like | 325 | 445 | IPR036915 | - | |
Cma07g01100 | 455 | PIRSF | Cyclin_A_B_D_E | 1 | 453 | IPR039361 | - | |
Cma07g01100 | 455 | Pfam | Cyclin, C-terminal domain | 325 | 443 | IPR004367 | - | |
Cma07g01100 | 455 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cma07g01100 | 455 | PANTHER | G2/MITOTIC-SPECIFIC CYCLIN S13-6 | 21 | 449 | - | - | |
Cma07g01100 | 455 | SUPERFAMILY | Cyclin-like | 187 | 322 | IPR036915 | - | |
Cma07g01100 | 455 | CDD | CYCLIN | 226 | 315 | IPR013763 | - | |
Cma07g01100 | 455 | Gene3D | - | 198 | 439 | - | - | |
Cma07g01100 | 455 | Pfam | Cyclin, N-terminal domain | 198 | 322 | IPR006671 | - | |
Cma07g01100 | 455 | ProSitePatterns | Cyclins signature. | 227 | 258 | IPR006671 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g02011 | Cma-Chr1:12878049 | Cma07g01100 | Cma-Chr7:5953674 | 1.06E-82 | dispersed | |
Cma02g01292 | Cma-Chr2:7574896 | Cma07g01100 | Cma-Chr7:5953674 | 1.44E-140 | dispersed | |
Cma03g00627 | Cma-Chr3:5435253 | Cma07g01100 | Cma-Chr7:5953674 | 1.68E-78 | dispersed | |
Cma07g00387 | Cma-Chr7:1663930 | Cma07g01100 | Cma-Chr7:5953674 | 9.84E-81 | dispersed | |
Cma07g01100 | Cma-Chr7:5953674 | Cma07g01103 | Cma-Chr7:5980240 | 0 | dispersed | |
Cma07g01100 | Cma-Chr7:5953674 | Cma07g01101 | Cma-Chr7:5964629 | 4.06E-172 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g01100 | K21777 | - | csv:101217210 | 711.449 |