Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01100 ATGGCTACAAGACCAGTAGTTCCTCAACAAATCAGAGGTGAAGCGGCGATTGGAGGAGGAAAGCAGGGGAAGGGCGGGGCGGCGGTGGATGCGAGGAACCGCAGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAAGGCTAATCGCCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCTCAAGCGGCTGCAAAAGCTGAAAATAATATGAAACAAGTGCCTGTTAAAGTAGATGGGGCTGCTCCCATTCTTGATGGTGGTGTTGTGGCCGTTAAGAAACCAGGAGCTCCCAAAGCAGCAACAAAGAAGGTTGTTTCCAAACCGAAAGCGGAGGTGATCGAGATAAGCCCGGATAAGGAAGAACAAGATCGGGGCAAGGAAGTCAAATGTGGTAACAAGAAAAAGGAAGAAGGGGTCTCAAAGAAGAAGGCACAGACTCTCACCGCAGTCCTGACAGCTAGAAGCAAGGCTGCTTGTGGAGTAACCAAGAAACCAAAGGAACAGATATTTGACATTGACGCAGCAGATGTTGGAAATGAGTTGGCAGAAGTGGAATATGTTGAGGACATTTATAAGTTCTATAAGGAAGTTGAGCATGAGAGTAGGCCTCATGACTATATGGACTCACAACCGGAGATAAACACTTCAATGAGAGCAATATTGGTGGATTGGTTAGTTGATGTCCACAACAAGTTCGAGCTTTCCCCTGAAACATTCTACCTCACCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTTCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCACCAGAGGTAAATGACTTCGTGTGCCTTTCCGATAGAGCGTACACGAATGAACAGATACTAATGATGGAGAAAAGGATACTTGGGAAGCTTGAATGGACCATGACTTTGCCTACTCCCTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGTATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCTGGTTGGGACGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTAATTGATTGTGCAAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAATACTCCAGCTCCGAGAGGGGAGCGGTGGCGTTACTTCAGCCACCCAAAGCTCCCTTGGTGGTGCCTCCTAATGGTCATTGA 1368 47.51 MATRPVVPQQIRGEAAIGGGKQGKGGAAVDARNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNMKQVPVKVDGAAPILDGGVVAVKKPGAPKAATKKVVSKPKAEVIEISPDKEEQDRGKEVKCGNKKKEEGVSKKKAQTLTAVLTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDIYKFYKEVEHESRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILMMEKRILGKLEWTMTLPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKAPGWDETLKLHTGFTEPQLIDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKAPLVVPPNGH 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5953674 5955809 - CmaCh07G011000.1 Cma07g01100 298415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01100 455 Gene3D - 212 323 - -
Cma07g01100 455 CDD CYCLIN 323 412 IPR013763 -
Cma07g01100 455 SMART cyclin_7 232 316 IPR013763 -
Cma07g01100 455 SMART cyclin_7 329 413 IPR013763 -
Cma07g01100 455 SMART Cyclin_C_2 325 444 IPR004367 -
Cma07g01100 455 PANTHER CYCLINS 21 449 IPR039361 -
Cma07g01100 455 SUPERFAMILY Cyclin-like 325 445 IPR036915 -
Cma07g01100 455 PIRSF Cyclin_A_B_D_E 1 453 IPR039361 -
Cma07g01100 455 Pfam Cyclin, C-terminal domain 325 443 IPR004367 -
Cma07g01100 455 MobiDBLite consensus disorder prediction 1 27 - -
Cma07g01100 455 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 449 - -
Cma07g01100 455 SUPERFAMILY Cyclin-like 187 322 IPR036915 -
Cma07g01100 455 CDD CYCLIN 226 315 IPR013763 -
Cma07g01100 455 Gene3D - 198 439 - -
Cma07g01100 455 Pfam Cyclin, N-terminal domain 198 322 IPR006671 -
Cma07g01100 455 ProSitePatterns Cyclins signature. 227 258 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02011 Cma-Chr1:12878049 Cma07g01100 Cma-Chr7:5953674 1.06E-82 dispersed
Cma02g01292 Cma-Chr2:7574896 Cma07g01100 Cma-Chr7:5953674 1.44E-140 dispersed
Cma03g00627 Cma-Chr3:5435253 Cma07g01100 Cma-Chr7:5953674 1.68E-78 dispersed
Cma07g00387 Cma-Chr7:1663930 Cma07g01100 Cma-Chr7:5953674 9.84E-81 dispersed
Cma07g01100 Cma-Chr7:5953674 Cma07g01103 Cma-Chr7:5980240 0 dispersed
Cma07g01100 Cma-Chr7:5953674 Cma07g01101 Cma-Chr7:5964629 4.06E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01100 K21777 - csv:101217210 711.449