Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g01101 | ATGAGAGCAATATTGGTGGATTGGTTAGTTGATGTCCACAACAAGTTCGAGCTTTCCCCTGAAACATTCTACCTCATCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTTCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCACCAGAGGTAAATGACTTCGTGTGCCTTTCCGATAGAGCGTACACGAATGAACAGATACTAATGATGGAGAAAAGGATACTTGGGAAGCTTGAATGGACCATGACTTTGCCTACTCCCTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGTATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCTGGTTGGGACGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTAATTGATTGTGCAAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAGTACTCCAGCTCCGAGAGGGGAGCGGTGGCGTTACTTCAGCCACCCAAAGCTCTCTTGGTGGTGCCTCCTAATGGTCATTGA | 693 | 47.47 | MRAILVDWLVDVHNKFELSPETFYLIINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILMMEKRILGKLEWTMTLPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKAPGWDETLKLHTGFTEPQLIDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKALLVVPPNGH | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5964629 | 5965591 | - | CmaCh07G011010.1 | Cma07g01101 | 298416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g01101 | 230 | Gene3D | - | 1 | 91 | - | - | |
| Cma07g01101 | 230 | PANTHER | G2/MITOTIC-SPECIFIC CYCLIN S13-6 | 1 | 224 | - | - | |
| Cma07g01101 | 230 | PANTHER | CYCLINS | 1 | 224 | IPR039361 | - | |
| Cma07g01101 | 230 | SUPERFAMILY | Cyclin-like | 1 | 97 | IPR036915 | - | |
| Cma07g01101 | 230 | CDD | CYCLIN | 1 | 90 | IPR013763 | - | |
| Cma07g01101 | 230 | SMART | Cyclin_C_2 | 100 | 219 | IPR004367 | - | |
| Cma07g01101 | 230 | Pfam | Cyclin, N-terminal domain | 1 | 97 | IPR006671 | - | |
| Cma07g01101 | 230 | Gene3D | - | 92 | 227 | - | - | |
| Cma07g01101 | 230 | CDD | CYCLIN | 98 | 187 | IPR013763 | - | |
| Cma07g01101 | 230 | SUPERFAMILY | Cyclin-like | 100 | 220 | IPR036915 | - | |
| Cma07g01101 | 230 | SMART | cyclin_7 | 7 | 91 | IPR013763 | - | |
| Cma07g01101 | 230 | SMART | cyclin_7 | 104 | 188 | IPR013763 | - | |
| Cma07g01101 | 230 | PIRSF | Cyclin_A_B_D_E | 1 | 228 | IPR039361 | - | |
| Cma07g01101 | 230 | Pfam | Cyclin, C-terminal domain | 100 | 218 | IPR004367 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g01101 | Cma-Chr7:5964629 | Cma07g01103 | Cma-Chr7:5980240 | 1.09E-154 | dispersed | |
| Cma07g01100 | Cma-Chr7:5953674 | Cma07g01101 | Cma-Chr7:5964629 | 4.06E-172 | tandem | |
| Cma07g01101 | Cma-Chr7:5964629 | Cma07g01102 | Cma-Chr7:5974638 | 1.31E-167 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g01101 | K21777 | - | csv:101217210 | 407.142 |