Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01102 ATGGCTTCAAGAGCAGTAGTTCCCCAACAAATCAGAGGCGAGGTGGAGATCGGCAGAGGGAAGCAGGGGAAGGGTGGTGCAGCGGCGGGTGCCAGGAGCCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAAGGTTAATCGCCCTATTACAAGGAGTTTCTGCGCTCAGATGCTTGCTAATGCCCAAGCGGCTGCAAAAGCTGAAAATAATAAGAAACAAGTGCCTGTTAGTGTAGATGGGGCTGCTCCCATTCTTGATGGTGGGGTTGTGGCTGTTAAGAAAGCAGGAGCTCCCAAGGCAGCACCCAAGAAAGTTGTTTCCAAACCGAAAGCCGAGGTGATCGAGATAAGCCCGGATACGGTCGAAAAAGATCGGGGCAAGGAAGTGAAATGTGGTAACAAGAAAAAGGAAGGAGAAGGGGTCTCAAAGAAGAAGGCACAGACTCTCACCGCAGTCATGACGGCTAGAAGCAAGGCTGCTTGTGGAGTAACCAAGAAACCAAAGGAACAGATATTTGACATTGACGCAGCAGATGTTGGAAATGAGTTGGCAGAAGTGGAATATGTTGAGGACATTTATAAGTTCTATAAGGAAGTTGAGAATGAGAGTAGGCCTCATGACTATATGGACTCACAACCAGAGATAAACACTTCAATGAGAGCAATATTGGTGGATTGGTTAGTTGATGTCCACAACAAGTTCGAGCTTTCCCCTGAAACATTCTACCTCATCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTTCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCGCCAGAGGTAAACGACTTCGTGTGCCTTTCAGATAGAGCGTACACGAATGAACAGATACTAATGATGGAGAAAAGGATACTTGGGAAGCTTGAATGGACCATGACTTTGCCTACTCCCTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGTATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCTGGTTGGGACGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTAATGCGTCAACTAATTGTGCTATTGTTGTTGTTATATGTGAACCACAGTGATTGTGCAAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAGTACTCCAGCTCCGAGAGGGGAGCGGTGGCGTTACTTCAGCCACCCAAAGCTCTCTTGGTGGTGCCTCCTAAT 1407 47.69 MASRAVVPQQIRGEVEIGRGKQGKGGAAAGARSRRALGDIGNLVTVRGIDAKVNRPITRSFCAQMLANAQAAAKAENNKKQVPVSVDGAAPILDGGVVAVKKAGAPKAAPKKVVSKPKAEVIEISPDTVEKDRGKEVKCGNKKKEGEGVSKKKAQTLTAVMTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDIYKFYKEVENESRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLIINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTNEQILMMEKRILGKLEWTMTLPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKAPGWDETLKLHTGFTEPQLMRQLIVLLLLLYVNHSDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKALLVVPPN 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5974638 5976745 - CmaCh07G011020.1 Cma07g01102 298417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01102 469 CDD CYCLIN 227 316 IPR013763 -
Cma07g01102 469 PANTHER CYCLINS 22 465 IPR039361 -
Cma07g01102 469 SMART cyclin_7 233 317 IPR013763 -
Cma07g01102 469 SMART cyclin_7 330 414 IPR013763 -
Cma07g01102 469 Gene3D - 318 466 - -
Cma07g01102 469 Pfam Cyclin, C-terminal domain 326 459 IPR004367 -
Cma07g01102 469 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cma07g01102 469 CDD CYCLIN 324 407 IPR013763 -
Cma07g01102 469 PIRSF Cyclin_A_B_D_E 1 468 IPR039361 -
Cma07g01102 469 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 22 465 - -
Cma07g01102 469 SUPERFAMILY Cyclin-like 327 463 IPR036915 -
Cma07g01102 469 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cma07g01102 469 Gene3D - 213 317 - -
Cma07g01102 469 SMART Cyclin_C_2 326 460 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01102 Cma-Chr7:5974638 Cma19g01118 Cma-Chr19:9188299 1.30E-67 dispersed
Cma07g01101 Cma-Chr7:5964629 Cma07g01102 Cma-Chr7:5974638 1.31E-167 tandem
Cma07g01102 Cma-Chr7:5974638 Cma07g01103 Cma-Chr7:5980240 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01102 K21777 - csv:101217210 686.026