Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01103 ATGGCTTCAAGAACAGTAGTTCCCCAACAAATCAGAGGTGATGAAGCCATCGGGGGAGGAAAGCAGGTGAAGGGCGGGGCGGCGGTGGATGCGAGGAACCGCAGAGCATTGGGTGATATTGGGAATCTGGTAACCGTTCGAGGAAATGACGCAAAGGCAAATCGCCCTGTTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAATTAGTGCCTGTCAGTGTAGATGGGGCTGCTCCTATTCTTGATGGTGGTGTTGTGGCCGTTAAGAAACCAGGAGCTCCCAAGGCAGCAACAAAGAAGGTTGTTTCCAAACCGAAAGCGGAGGTGATTGAGATAAGCCCGGATAAGGTCGAACAAGATCGGGGCAAGGAAGTGAAATGTGGTAACAAGAAAAAGGAAGAAGGGGTCTCAAAGAAGAAGGCACAGACTCTCTCCGCAGTCCTGACGGCTAGAAGCAAGGCTGCTTGTGGAGTAACCAAGAAACCAAAGGAACGGATATTTGACATTGACGCAGCAGATGTTGGAAATGAGTTGGCAGAAGTGGAATATGTTGAGGACATTTATAAGTTCTATAAGGAAGTTGAGAATGAGAGTAGGCCTCATGACTATATGGACTCACAACCGGAGATAAACACTTCAATGAGAGCAATATTGGTGGATTGGTTAGTTGATGTCCACAACAAGTTCGAGCTTTCCCCTGAAACATTCTACCTCACCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTTCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCGCCGGAGATACTAATGATGGAGAAAAGGATACTTGGGAAGCTTGAATGGACCATGACTTTGCCTACTCCCTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGTATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCTGGTTGGGACGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTAATTGATTGTGCAAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAATACTCCAGCTCCGAGAGGGGAGCGGTGGCGTTACTTCAGCCACCCAAAGCTCCCTTGGTGGTGCCTCCTAATGGTCATTGA 1320 47.95 MASRTVVPQQIRGDEAIGGGKQVKGGAAVDARNRRALGDIGNLVTVRGNDAKANRPVTRSFCAQLLANAQAAAKAENNKKLVPVSVDGAAPILDGGVVAVKKPGAPKAATKKVVSKPKAEVIEISPDKVEQDRGKEVKCGNKKKEEGVSKKKAQTLSAVLTARSKAACGVTKKPKERIFDIDAADVGNELAEVEYVEDIYKFYKEVENESRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEILMMEKRILGKLEWTMTLPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKAPGWDETLKLHTGFTEPQLIDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKAPLVVPPNGH 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5980240 5987496 + CmaCh07G011030.1 Cma07g01103 298418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01103 439 SMART cyclin_7 232 300 IPR013763 -
Cma07g01103 439 SMART cyclin_7 313 397 IPR013763 -
Cma07g01103 439 PANTHER CYCLINS 21 433 IPR039361 -
Cma07g01103 439 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 433 - -
Cma07g01103 439 CDD CYCLIN 307 396 IPR013763 -
Cma07g01103 439 PIRSF Cyclin_A_B_D_E 1 437 IPR039361 -
Cma07g01103 439 Pfam Cyclin, C-terminal domain 309 427 IPR004367 -
Cma07g01103 439 CDD CYCLIN 226 291 IPR013763 -
Cma07g01103 439 Gene3D - 301 432 - -
Cma07g01103 439 SUPERFAMILY Cyclin-like 309 429 IPR036915 -
Cma07g01103 439 Pfam Cyclin, N-terminal domain 198 291 IPR006671 -
Cma07g01103 439 SMART Cyclin_C_2 309 428 IPR004367 -
Cma07g01103 439 MobiDBLite consensus disorder prediction 1 22 - -
Cma07g01103 439 Gene3D - 212 300 - -
Cma07g01103 439 ProSitePatterns Cyclins signature. 227 258 IPR006671 -
Cma07g01103 439 SUPERFAMILY Cyclin-like 187 306 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01100 Cma-Chr7:5953674 Cma07g01103 Cma-Chr7:5980240 0 dispersed
Cma07g01101 Cma-Chr7:5964629 Cma07g01103 Cma-Chr7:5980240 1.09E-154 dispersed
Cma07g01103 Cma-Chr7:5980240 Cma19g01118 Cma-Chr19:9188299 3.09E-64 dispersed
Cma07g01102 Cma-Chr7:5974638 Cma07g01103 Cma-Chr7:5980240 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01103 K21777 - csv:101217210 669.077