Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g01103 | ATGGCTTCAAGAACAGTAGTTCCCCAACAAATCAGAGGTGATGAAGCCATCGGGGGAGGAAAGCAGGTGAAGGGCGGGGCGGCGGTGGATGCGAGGAACCGCAGAGCATTGGGTGATATTGGGAATCTGGTAACCGTTCGAGGAAATGACGCAAAGGCAAATCGCCCTGTTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAATTAGTGCCTGTCAGTGTAGATGGGGCTGCTCCTATTCTTGATGGTGGTGTTGTGGCCGTTAAGAAACCAGGAGCTCCCAAGGCAGCAACAAAGAAGGTTGTTTCCAAACCGAAAGCGGAGGTGATTGAGATAAGCCCGGATAAGGTCGAACAAGATCGGGGCAAGGAAGTGAAATGTGGTAACAAGAAAAAGGAAGAAGGGGTCTCAAAGAAGAAGGCACAGACTCTCTCCGCAGTCCTGACGGCTAGAAGCAAGGCTGCTTGTGGAGTAACCAAGAAACCAAAGGAACGGATATTTGACATTGACGCAGCAGATGTTGGAAATGAGTTGGCAGAAGTGGAATATGTTGAGGACATTTATAAGTTCTATAAGGAAGTTGAGAATGAGAGTAGGCCTCATGACTATATGGACTCACAACCGGAGATAAACACTTCAATGAGAGCAATATTGGTGGATTGGTTAGTTGATGTCCACAACAAGTTCGAGCTTTCCCCTGAAACATTCTACCTCACCATCAACATAATTGATCGCTTCCTTGCGAGGAAGGCAGTTCCAAGAAGGGAATTGCAGTTGTTGGGTATTGGGGCAATGCTCATAGCCTCCAAATACGAGGAGATCTGGGCGCCGGAGATACTAATGATGGAGAAAAGGATACTTGGGAAGCTTGAATGGACCATGACTTTGCCTACTCCCTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTATATTTTCTGGCAGAACTTGGTATAATGCATTACAACACCTCAATAATGTACAGCCCATCAATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCTGGTTGGGACGAGACCCTCAAACTGCACACTGGCTTCACAGAGCCTCAACTAATTGATTGTGCAAAGCATTTGGTGGGATTCCATGGAGCAGCAAGCAAGAACAAGCTTCAAGTAATATACAGAAAATACTCCAGCTCCGAGAGGGGAGCGGTGGCGTTACTTCAGCCACCCAAAGCTCCCTTGGTGGTGCCTCCTAATGGTCATTGA | 1320 | 47.95 | MASRTVVPQQIRGDEAIGGGKQVKGGAAVDARNRRALGDIGNLVTVRGNDAKANRPVTRSFCAQLLANAQAAAKAENNKKLVPVSVDGAAPILDGGVVAVKKPGAPKAATKKVVSKPKAEVIEISPDKVEQDRGKEVKCGNKKKEEGVSKKKAQTLSAVLTARSKAACGVTKKPKERIFDIDAADVGNELAEVEYVEDIYKFYKEVENESRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLARKAVPRRELQLLGIGAMLIASKYEEIWAPEILMMEKRILGKLEWTMTLPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYNTSIMYSPSMIAASAVYAARCTLKKAPGWDETLKLHTGFTEPQLIDCAKHLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPPKAPLVVPPNGH | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5980240 | 5987496 | + | CmaCh07G011030.1 | Cma07g01103 | 298418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g01103 | 439 | SMART | cyclin_7 | 232 | 300 | IPR013763 | - | |
Cma07g01103 | 439 | SMART | cyclin_7 | 313 | 397 | IPR013763 | - | |
Cma07g01103 | 439 | PANTHER | CYCLINS | 21 | 433 | IPR039361 | - | |
Cma07g01103 | 439 | PANTHER | G2/MITOTIC-SPECIFIC CYCLIN S13-6 | 21 | 433 | - | - | |
Cma07g01103 | 439 | CDD | CYCLIN | 307 | 396 | IPR013763 | - | |
Cma07g01103 | 439 | PIRSF | Cyclin_A_B_D_E | 1 | 437 | IPR039361 | - | |
Cma07g01103 | 439 | Pfam | Cyclin, C-terminal domain | 309 | 427 | IPR004367 | - | |
Cma07g01103 | 439 | CDD | CYCLIN | 226 | 291 | IPR013763 | - | |
Cma07g01103 | 439 | Gene3D | - | 301 | 432 | - | - | |
Cma07g01103 | 439 | SUPERFAMILY | Cyclin-like | 309 | 429 | IPR036915 | - | |
Cma07g01103 | 439 | Pfam | Cyclin, N-terminal domain | 198 | 291 | IPR006671 | - | |
Cma07g01103 | 439 | SMART | Cyclin_C_2 | 309 | 428 | IPR004367 | - | |
Cma07g01103 | 439 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cma07g01103 | 439 | Gene3D | - | 212 | 300 | - | - | |
Cma07g01103 | 439 | ProSitePatterns | Cyclins signature. | 227 | 258 | IPR006671 | - | |
Cma07g01103 | 439 | SUPERFAMILY | Cyclin-like | 187 | 306 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g01100 | Cma-Chr7:5953674 | Cma07g01103 | Cma-Chr7:5980240 | 0 | dispersed | |
Cma07g01101 | Cma-Chr7:5964629 | Cma07g01103 | Cma-Chr7:5980240 | 1.09E-154 | dispersed | |
Cma07g01103 | Cma-Chr7:5980240 | Cma19g01118 | Cma-Chr19:9188299 | 3.09E-64 | dispersed | |
Cma07g01102 | Cma-Chr7:5974638 | Cma07g01103 | Cma-Chr7:5980240 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g01103 | K21777 | - | csv:101217210 | 669.077 |