Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01119 ATGGACTTATTACAGTCTTTAGATCCTCAAATCCTTCTGGGTTTGGCTGTGGCCGTTTTAGCTCTTGCCTTTGGTGCTCTCTATTTGTTATCCTCGTCCAAGAAAACCAAATCCGGAGGTTGCTTGGATCCAGAGAATTTCAAGGAGTTTAAGCTTATCAAGCGTGCGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCAAGTTCTACTTCAGTTTTGGGCCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGATGTTATCAAACCTTATACACCTATTACGTTGGATTCTGATGTCGGATATTTTGAATTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTCGGTGATTTTCTGTCTGTGAAAGGGCCCAAGGGGCGATTCAGGTATCAACCAGGCGAGGTCAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCCATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAACGTCACCTACGAGGACATTCTTTTGAAGGAGGAGTTGGATCTTCTCGCCTCAAGGTACCCAGATAGCTTCAAGCTCTATTATGTTTTAAACCAGCCTCCTGAATCGTGGGACGGTGGCATTGGATTTGTGACGAAGGAGATGATTCAAACCCATTGCCCTGCTCCTGCTTCTGATGTTCGGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGGATACGCACCAGAGATGCTGTTCATGTTCTGA 846 45.74 MDLLQSLDPQILLGLAVAVLALAFGALYLLSSSKKTKSGGCLDPENFKEFKLIKRAQLSHNVAKFTFTLPSSTSVLGLPIGQHISCRGKDGQGEDVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLSVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLASRYPDSFKLYYVLNQPPESWDGGIGFVTKEMIQTHCPAPASDVRILRCGPPPMNKAMAAHLEALGYAPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6087617 6091803 - CmaCh07G011190.1 Cma07g01119 298434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01119 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cma07g01119 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 IPR001834 GO:0016491
Cma07g01119 281 Gene3D - 140 281 IPR039261 -
Cma07g01119 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cma07g01119 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cma07g01119 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cma07g01119 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cma07g01119 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cma07g01119 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cma07g01119 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cma07g01119 281 CDD cyt_b5_reduct_like 50 281 - -
Cma07g01119 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491
Cma07g01119 281 Gene3D Translation factors 40 139 - -
Cma07g01119 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491
Cma07g01119 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cma07g01119 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01119 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212569 498.049
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00173 Cma07g01119 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01305 Cma-Chr5:9899531 Cma07g01119 Cma-Chr7:6087617 1.13E-71 dispersed
Cma07g01119 Cma-Chr7:6087617 Cma12g01219 Cma-Chr12:9499991 4.45E-63 dispersed
Cma06g00055 Cma-Chr6:301096 Cma07g01119 Cma-Chr7:6087617 1.09E-172 transposed
Cma20g00014 Cma-Chr20:36360 Cma07g01119 Cma-Chr7:6087617 9.08E-152 transposed
Cma03g00173 Cma-Chr3:2315618 Cma07g01119 Cma-Chr7:6087617 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g01119 Cma_Chr07 FPKM 27.724682 26.343489 12.041586 11.65405 24.625637 20.782389 20.698973 20.010098 19.444105 20.547939