Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01172 ATGAATGACTTGATGACTCAATCGTTCACGAACTATGTGGATCTGAAGAAAGCTGCTATGAAAGATATCGACCTCGAAGCCAGTTTTGAAACGGTGTCATCTGATACCGACAATGGCGATATGGGGCTCTTCCTTGAAGAGGCTGAGAAGGTGAAATTGGAGATGGGTTCTATTAGAGAGATTCTGGGAAAGCTTCAGCAGGTCAATGAGGAGACGAAATCTGCTCATAAACCCGAAACTCTCAAATCGCTTCGTCAGATGATTAATGGCGACATCGTTACCGTCCTGAAGAAGGCTCGATCGATCCGTTCTAAACTTGAGGAAATGGACCGTGCTAATGATGCTAAGAAGCGGCTCTCGGCCAGCAAAGAAGGAACTGCCATTTACCGGACTCGTATCGCGGTGACCAACGGCCTAAGAAAGAAGCTAAAGGAGCTAATGATGGAGTTTCAAACCCTAAGACAAAGGATGATGATGGAGTACAAAGAGACGGTGGGGCGACGATACTTCACGGTGACGGGGGAGCACCCAGAGGAGGAGGTGATAGAGAAGATAATATCGAATGGAGGGGAGGAGTTTTTGGGGAGGGCAATAGAGGAGCACGGGTGGGGGAAGGTAGCGGAGACGGTGGTGGAGATACAAGACCGACACGGGGCGGCGAAGGAGATCGAGAGAAGCTTGCTAGAGTTGCACCAGGTGTTCTTGGACATGGCAGTGATGGTGGAAGCACAAGGGGAGAAAATGGATGACATTGAACACCATGTGATGAATGCTTCACAATATGTAAGAGATGGGAGTAAGGATTTGAAGAGTGCTAAGGATTTGCAAAGGATCAATAGGAAATGGATGTGCTTTGGGGTTTTGCTTTTGCTCATTATTATTTTGGTTGTTGTTATTCCCATTGCTGTTAGTTTTGGGAGTTCTTGA 927 47.14 MNDLMTQSFTNYVDLKKAAMKDIDLEASFETVSSDTDNGDMGLFLEEAEKVKLEMGSIREILGKLQQVNEETKSAHKPETLKSLRQMINGDIVTVLKKARSIRSKLEEMDRANDAKKRLSASKEGTAIYRTRIAVTNGLRKKLKELMMEFQTLRQRMMMEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGWGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGSKDLKSAKDLQRINRKWMCFGVLLLLIIILVVVIPIAVSFGSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6428287 6430478 - CmaCh07G011720.1 Cma07g01172 298487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01172 308 Gene3D - 36 165 - -
Cma07g01172 308 SMART tSNARE_6 205 272 IPR000727 -
Cma07g01172 308 ProSitePatterns Syntaxin / epimorphin family signature. 216 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma07g01172 308 SMART SynN_4 36 162 IPR006011 GO:0016020
Cma07g01172 308 PANTHER SYNTAXIN 4 301 IPR045242 -
Cma07g01172 308 Coils Coil 102 122 - -
Cma07g01172 308 CDD SNARE_syntaxin1-like 209 270 - -
Cma07g01172 308 Pfam SNARE domain 247 298 IPR000727 -
Cma07g01172 308 SUPERFAMILY t-snare proteins 40 265 IPR010989 GO:0016020|GO:0016192
Cma07g01172 308 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 301 - -
Cma07g01172 308 Coils Coil 136 156 - -
Cma07g01172 308 Pfam Syntaxin 44 245 IPR006011 GO:0016020
Cma07g01172 308 Gene3D - 205 306 - -
Cma07g01172 308 CDD SynN 41 197 IPR006011 GO:0016020
Cma07g01172 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01172 Cma-Chr7:6428287 Cma13g00676 Cma-Chr13:6245413 4.18E-91 dispersed
Cma03g00740 Cma-Chr3:5887631 Cma07g01172 Cma-Chr7:6428287 3.23E-68 transposed
Cma03g00248 Cma-Chr3:3546408 Cma07g01172 Cma-Chr7:6428287 5.18E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01172 K08486 - csv:101220775 512.301