Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01176 ATGGCAGAAGTTGATCCTCCTCCCTTCTTCCTTTGTCCCATCTCTTTGCAAATTATGAAAGATCCCGTCACGGTCGCCTCCGGCATAACCTACGATCGGGAGAACATCGAGAGATGGTTGTTTTTCGATAAACATACGACGTGTCCGGTCACGCAAGTGGTCTTGTCGGACTTTGATATCACTCCCAATAATACTCTCTCCCGTTTGATTCAAGCTTGGAGCACTCTCAACGATGGGGTCGACAGGATTCCGACACCGAAGCCTCCGATTGACAAGAAACAAGTCATCAAGATTCTTGCAAATGTGAAGCTGTCTCCTTTCTCTCAACAGAATTGTTTGCAACGACTCCGGTCTATCGCATCAACAAACGAGACGAATAAACGTTGTATGGAAGCTGCTGGAGCGGTGGAGTTCTTGGTTGGAGTTGCGTATTTCGCGTTTGACGATCCGTTAGCGAATTTGGGCGATGAGGCATTAAGCATTCTTTACAAACTTCAAATCTCTGAATCCGGCCTCAAGTTTCTTCTCGCCAACAATGGCGGCATCTTCGTCACAACCCTAACAAAATTCTTACAAAACGGCACTTATGGCTCCCGAGCGTATGCAACAATGCTTCTTCAATCGATGTTCGAAGTCGCCGATGAGATTCAGATTCGCAGTCTAAATCTTGAATTCTTCGTTGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCCTCCAAATCGGCATTGAAATTGCTAATCGGACTCTGTTCGAGTTTCAGAAACAGAGTAAATGCAGTTCAAGCTGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTGGATCTCGATTTGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGCGCTTGATCTGCTCTGCAGCTGTGCTGACGGCAGAGCGGAGCTATTGAACCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTCTCAGAGTTTCGTCGCTTGGAAGCGAGAAGGCCGTCGGAATTTTGTGCTCTATTGCGAGATTCTCGGCGAGCCAATCCGTCGTTCAGGAAATGGTGCGGCTCGGAGTTGTGATGAAGCTCTGTTTTCTGCTTCAAGTCGTCGGCGCCGGAGCGAAAGCGAAAGAGAAGGCGAAAGAGATTCTAAAGCTTCATGGTCGAACATGGCGGAATTCTTCATGTTTTCCTTCGAGTTTGCGACCTTCTTATCCATTTTAG 1215 48.15 MAEVDPPPFFLCPISLQIMKDPVTVASGITYDRENIERWLFFDKHTTCPVTQVVLSDFDITPNNTLSRLIQAWSTLNDGVDRIPTPKPPIDKKQVIKILANVKLSPFSQQNCLQRLRSIASTNETNKRCMEAAGAVEFLVGVAYFAFDDPLANLGDEALSILYKLQISESGLKFLLANNGGIFVTTLTKFLQNGTYGSRAYATMLLQSMFEVADEIQIRSLNLEFFVEIVQILKDQISKQASKSALKLLIGLCSSFRNRVNAVQAGAVPVLIDLLLDLDLSEKRLCEMILVALDLLCSCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILCSIARFSASQSVVQEMVRLGVVMKLCFLLQVVGAGAKAKEKAKEILKLHGRTWRNSSCFPSSLRPSYPF 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6454855 6456390 - CmaCh07G011760.1 Cma07g01176 298491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01176 404 SUPERFAMILY ARM repeat 105 361 IPR016024 -
Cma07g01176 404 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Cma07g01176 404 Gene3D - 88 385 IPR011989 -
Cma07g01176 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Cma07g01176 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 404 - -
Cma07g01176 404 CDD RING-Ubox_PUB 10 52 IPR045210 -
Cma07g01176 404 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Cma07g01176 404 PANTHER WDSAM1 PROTEIN 1 404 IPR045185 GO:0061630
Cma07g01176 404 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Cma07g01176 404 SUPERFAMILY RING/U-box 3 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00527 Cma-Chr6:2467864 Cma07g01176 Cma-Chr7:6454855 4.78E-138 dispersed
Cma07g01176 Cma-Chr7:6454855 Cma20g00146 Cma-Chr20:723481 5.58E-135 dispersed
Cma03g00257 Cma-Chr3:3616151 Cma07g01176 Cma-Chr7:6454855 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01176 - - cmo:103485961 597.045