Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01178 ATGGCAACTTACGCTTTGCTTGGCGACTCCACTGTCCGCGTTAATGGCGGTTTCGATGACGGTTCACTGACCAGCAACTCGACGAACAGCAACGGCAGCGAAGAACTTAATCAACAGATTGTTCAAGTTCCGGTTCAGGTTTCTCAACCGCCGCCGCGATTACCGCCTGGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATAGAGATCGAAGAACTCGACGGCGGAGGCGGCGGTATCGCCGCCGTTAATCCACGGTTTTGCCGGCGGAGTTTGGCTTCCGATCGTCCTTTTGCAGGTGGAGAAAATAAGACGAATGAGAATGTGGATAACTATTGTTCTTCTTCAAACCCTAGCCATGGCGCTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTGGTCGCAGGGTCAAATTTATCAAATCCTCCGTCTGGTTCTGATGCTACGGCTTCTTCCACTACCTCCAACGTCTCGTCTCTTATTGATAGTACTCTTCCTGTTCTTCGTCCTCAGCCCCACCATCGCCATTTGCAGAATCCTGCAGTCTGTGGGTTTTCTGGTTTACCCTTGTTCCCACCCGAGTCGAATCACCACCACCACCACAACAAGTTCAATACTCGCAATAATCCTTTCCCCATTCCTAATCCATGTCAGGTTGTTCTTCATAATCCTCCAACTTCTACAACGACCTCCATTATTGCCGCCGCTTCTACTCCGATGGATGATTCCTCCGCCACTGCTTGGATCGACGGTATTATCAAGGATTTAATCCACAGCTCCACTGTCGTATCCATTCCTCAGCTTATTCAGAACGTTCGTGATATTATCTACCCTTGTAACCCCAATCTTGCGAACCTTCTTGAGTTTCGTCTTCGTACTTTGACAGAACCTAACGTTCCTAACTTCGCCGCTGAGGATCAGCGTGTTAGGAAATCGCCCTTGCCGTCACCAGCGCCGGTGGGCGGCTTGGGGCTGCAGCAGAGGCAGTTCAATCAAGAACATGAGCAAGAACAGGATTGTTCTGGGTTGAAGCTTAATCTCGATTCTTCTCTGCATAATCTTCCTAATTTCTCCTCTCAGCCTCCGTTTCATGACCCATACCTCCACTGGGGAGCCACTCCTACCCCCGCCCCCACTCCCTCCGTCGCCACCACCGGCGGCGAGGTTCCCGGTCATCAACTTAATCTCTCTTCTGTTGCACATTCATCATTTATTCCTCTAAACCATATCCCTTCTAAGCCACAGCCAGAACAGCAAAACTCCTGTCCGGTCAATGTGAAGGCAGCGGCGGCGGCGGCCGCACAGCCATCGCCCTCGCCGCCGACGAGTAATGATCCTTCAACGACTGCGTTACTGATTAGAGAGATAAAAGAGGAGATAAGGCAACAGAAGAGAGACGAAGAAGGGTTACACCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCCGTTTCTGCTGATAATTTAGAAGAAGCCAATAAGATGCTACTGGAAATCTCGGAGTTGTCGACGCCCTTTGGCACATCGGCGCAAAGAGTGGCGGCGTATTTCTCAGAAGCAATGTCGGCGAGGCTTGTGAGCTCATGTTTAGGCATATACGCCGCTTTGCCGCCGACGTTATTGCCCCATACACACAGCCAGAAGATAGCCTCAGCCTTTCAAGTCTTTAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACAGCCAATCAAGCCATTCAAGAAGCCTTCGAAAGGGAAGAGAGAGTTCACATCATAGATCTAGACATCATGCAAGGCCTTCAATGGCCAGGCCTCTTCCACATCTTGGCGTCTCGGCCGGGTGGGCCGCCCTATGTCCGCCTCACTGGGCTGGGGACCTCTCAGGAAGTTCTTGAGGCCACTGGCAAACGCCTCACTGAATTCGCCGAGAAGCTTGGCCTTCCGTTTGATTTCTTTCCTGTTGCAGATAAAATTGGCAATCTGGACTTGGAGAGGCTCAACGTGAGCCAAAGGGAAGCCGTTGCCGTCCATTGGATGCAGCATTCTCTTTACGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAGAGATTGGCTCCAAAAGTGGTGACGGTGGTCGAACAAGATCTGAGCCACACAGGCTCCTTCTTGGGAAGATTCGTAGAGGCCATTCATTACTATTCAGCACTGTTTGACTCTTTGGGTGTCAGCTATGGCGAAGAGAGTGAAGAGAGGCACTTAGTGGAGCAGCTACTGTTATCAAGGGAGATCAGAAACGTGCTGGCCGTCGGAGGACCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAACAATCTGGGTTTAAGGGCATTTCTCTGGCCGGTAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTGGAAGACAATGGGACTTTGAAACTTGGGTGGAAGGATCTATGTTTGCTGACAGCGTCGGCTTGGAAGCCGCCGTTTCATCACCATGATGCCGGCAACCACATCCCCAGGTACTGA 2556 50.9 MATYALLGDSTVRVNGGFDDGSLTSNSTNSNGSEELNQQIVQVPVQVSQPPPRLPPGKMVRKRIASEIEIEELDGGGGGIAAVNPRFCRRSLASDRPFAGGENKTNENVDNYCSSSNPSHGANHSTVHNLTALTSVVVAGSNLSNPPSGSDATASSTTSNVSSLIDSTLPVLRPQPHHRHLQNPAVCGFSGLPLFPPESNHHHHHNKFNTRNNPFPIPNPCQVVLHNPPTSTTTSIIAAASTPMDDSSATAWIDGIIKDLIHSSTVVSIPQLIQNVRDIIYPCNPNLANLLEFRLRTLTEPNVPNFAAEDQRVRKSPLPSPAPVGGLGLQQRQFNQEHEQEQDCSGLKLNLDSSLHNLPNFSSQPPFHDPYLHWGATPTPAPTPSVATTGGEVPGHQLNLSSVAHSSFIPLNHIPSKPQPEQQNSCPVNVKAAAAAAAQPSPSPPTSNDPSTTALLIREIKEEIRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPTLLPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSQREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQLLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHDAGNHIPRY 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6470874 6474256 - CmaCh07G011780.1 Cma07g01178 298493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01178 851 Pfam GRAS domain family 477 836 IPR005202 -
Cma07g01178 851 MobiDBLite consensus disorder prediction 308 328 - -
Cma07g01178 851 MobiDBLite consensus disorder prediction 415 451 - -
Cma07g01178 851 MobiDBLite consensus disorder prediction 415 429 - -
Cma07g01178 851 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 155 838 IPR005202 -
Cma07g01178 851 ProSiteProfiles GRAS family profile. 467 836 IPR005202 -
Cma07g01178 851 MobiDBLite consensus disorder prediction 142 161 - -
Cma07g01178 851 MobiDBLite consensus disorder prediction 369 391 - -
Cma07g01178 851 PANTHER PROTEIN SCARECROW 155 838 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00259 Cma07g01178 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01178 Cma-Chr7:6470874 Cma15g00743 Cma-Chr15:3614862 3.93E-69 dispersed
Cma04g00614 Cma-Chr4:3147711 Cma07g01178 Cma-Chr7:6470874 5.91E-161 transposed
Cma08g00261 Cma-Chr8:1498467 Cma07g01178 Cma-Chr7:6470874 9.23E-106 transposed
Cma15g00691 Cma-Chr15:3300339 Cma07g01178 Cma-Chr7:6470874 2.26E-48 transposed
Cma03g00259 Cma-Chr3:3640570 Cma07g01178 Cma-Chr7:6470874 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35437 PF03514 GRAS 1.60E-126 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01178 - - bhj:120074183 1377.07