Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01185 ATGGAGAAGTACGAGAAGCTCGAAAAGGTCGGCGAAGGAACTTACGGGAAGGTGTACAAGGCCAAAGATAAGGAAACTGGCCAACTTGTTGCTCTGAAGAAAACTCGCCTCGAAATGGACGAAGAAGGAGTTCCACCGACGGCGCTTCGTGAGGTTTCTCTTCTCCAATTGCTCTCTCAGTCTCTCTATGTTGTTCGTCTTCTCTGCGTTGAGCATGTTCACCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTATTTGAGTATCTGGATACTGATCTCAAGAAGTACATCGATTCGCATCGCAAGGGACCCAACCCTAGGCCTCTTCCTTCTTCCCTTGTTCAGAGTTTCTTGTTTCAACTCTGTAAGGGTGTTGCGCATTGTCATAGTCATGGCGTTCTCCATCGTGACCTGAAACCGCAGAATCTTCTTCTGGATCAGGGTAAGGGTATTCTGAAGATTGCCGATCTTGGCCTTGGCCGTGCATTTACTGTCCCTCTTAAGAGCTACACTCATGAGATTGTCACTCTCTGGTACCGTGCTCCTGAAGTTCTCCTTGGATCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGCTGAAATGGTGAGAAGGCAGGCCCTGTTCCCCGGAGATTCTGAGTTTCAACAGTTGCTCCACATTTTTAGGCTGCTAGGTACCCCCACCGAGAAACAGTGGCCTGGAGTTAGTTCTTTGCGGGACTGGCATGTCTATCCTCAATGGGAACCGCAGAATCTGACACGTGCAGTTCCATCCCTGGAACCCGAGGGTGCTGACCTTCTCTCGAAAATGCTTACATATAATCCGGCAGATAGAATCTCAGCGAAGGCAGCTCTAGAGCATCCGTACTTTGACAGCCTCGACAAGTCTCAGTATTAG 918 48.91 MEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGADLLSKMLTYNPADRISAKAALEHPYFDSLDKSQY 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6510948 6514467 + CmaCh07G011850.1 Cma07g01185 298500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01185 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Cma07g01185 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cma07g01185 305 SMART serkin_6 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01185 305 Gene3D Transferase(Phosphotransferase) domain 1 92 305 - -
Cma07g01185 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Cma07g01185 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01185 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01185 305 PANTHER CELL DIVISION PROTEIN KINASE 1 305 - -
Cma07g01185 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cma07g01185 305 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 305 - -
Cma07g01185 305 Coils Coil 305 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01421 Cma-Chr4:7262456 Cma07g01185 Cma-Chr7:6510948 5.10E-106 dispersed
Cma04g02007 Cma-Chr4:12511061 Cma07g01185 Cma-Chr7:6510948 3.27E-14 dispersed
Cma07g01185 Cma-Chr7:6510948 Cma18g00938 Cma-Chr18:8044895 1.79E-08 dispersed
Cma07g01185 Cma-Chr7:6510948 Cma01g02040 Cma-Chr1:12990690 1.52E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68717 PF00069 Pkinase 1.60E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01185 K07760 - csv:101204557 601.282