Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01190 ATGACGAGACAGAAAATTCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACTTTCTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTAGCCACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGCAAGCTATTTGACTATTCTAGCTCAAGCATGCAGGAGTTGCTGAGAAGACATAACATGATACCAGAGGTTAATAACTTTGGTCAGCAGCCTCCATCTCAGCTTGAAAAGGATGCCTATGCTAAATTGAGTGAAGAATTTGCAGCCAAAACCAAAGAGCTTAAGCATATGAGGGGAGAGGATCTTCAAGATTTGGGAATAGAAGAACTAAAGCAACTGGAGAAATTGCTGGAGATTGGTTTGAATCGTGTTATAGAGACCAAGGATGACAAGTTTCTAAAAGAAATTGGTGCTGGAAAGGAAAAGGAAACTTTGCTGATGAAAGAGAATCAGAGACTAAGAAATGGGATGGTAACTTTGAATCATAGGGAGCAAGAACAAGCAGTGATTGGTGGGAGCTCCTTGGGGTCAAAGTCAAACACCACCAGCTCCTCACCAAACCCTAATTCTCATGATTTTGAAGACATTTCTCTTAAATTGGGTCTGTGA 642 40.19 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMIPEVNNFGQQPPSQLEKDAYAKLSEEFAAKTKELKHMRGEDLQDLGIEELKQLEKLLEIGLNRVIETKDDKFLKEIGAGKEKETLLMKENQRLRNGMVTLNHREQEQAVIGGSSLGSKSNTTSSSPNPNSHDFEDISLKLGL 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6534588 6541834 + CmaCh07G011900.1 Cma07g01190 298505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01190 213 MobiDBLite consensus disorder prediction 180 213 - -
Cma07g01190 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma07g01190 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 211 - -
Cma07g01190 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma07g01190 213 Pfam K-box region 87 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g01190 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma07g01190 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma07g01190 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma07g01190 213 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cma07g01190 213 Coils Coil 91 111 - -
Cma07g01190 213 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Cma07g01190 213 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g01190 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma07g01190 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma07g01190 213 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 211 - -
Cma07g01190 213 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Cma07g01190 213 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01190 Cma-Chr7:6534588 Cma12g00198 Cma-Chr12:922037 1.15E-52 dispersed
Cma07g01190 Cma-Chr7:6534588 Cma16g00276 Cma-Chr16:1285453 9.67E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35438 PF01486 K-box 4.20E-15 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01190 - - csv:101223132 300.827