Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01209 ATGAGGCAACAATTCCTTTCTCTAGCATCATCTTTACTCATACTCATATACTTCCACTCCATTGCTGCTGATCTGAGCTCAGACAAGCAAGCTCTTCTCGAGTTCATTTCGACCGTTCCGCACGGTCGAAAACTCAACTGGGATTCTTCTACCTCAGTCTGCACTACATGGATTGGCATCACTTGCACCTCAGACCGCTCAAACGTGCTCGCTCTTAGGCTACCTGCCGTTGGTTTACACGGTCCGATCCTCGCCAATACACTCGGAAAGTTACACACTCTTAGAACTCTGAGTCTTCGATCTAACAATCTTTTCGGAAACGTTCCATCAGATGTTCTAGCCCTTCCCTCCTTAAAGTTTATGTATCTTCAACACAATAACTTTTCAGGTAAAATTCCTTCTTCCCTGTCTCCTAGCCTTACCTTCCTTGACCTGTCTTTCAACGATCTCTCTGGGGACATCCCGACTTCGATACGAACCTTAACGCACCTCATTTTCCTCAACCTTCAAAACAACTCCCTGACTGGATCCATTCCTGATATAGCTCACCTAAAGCTCAAGCTATTGAACTTGAGCTACAACCATCTTAGTGGTCCTATTCCTGCTTCTTTGCAATCATTTCCTGCTTCATCCTTTGAAGGGAACTTAAAGCTATGTGGCTCTCCTCTGAAAACTTGCTCGGTTAATATCGCCCCCGTACCCGTACCGTTGTCGTCTCCTCCCGAGAGGGAAAGGAGCATAAATATCGGAGCGATCGTTGCCATTGGATTAGGTGGTTCTGCAGTGCTGTTCCTCCTTGTGTTGATGATTATTGTCTGTTGTATGAAGAAAAAAGATGGTGAAGGTAATACTGATGCAATGAAAGGAGCTCGTAAAAGAACCGAGCTACCGAAGGAGGATTTCAGAAGCGGGGTACATGAGGCCGAGAAGAATAGGCTGGTTTTCCTTGAAGGATGTTCGTATAATTTTGATCTCGACGACTTGTTAAGAGCCTCGGCCGAGGTGCTCGGAAAAGGTAGTTATGGGACTACTTACAAGGCAATCTTGGAGGAAGGAACAACAGTTGTAGTAAAGAGGTTGAAAGAAATGGTAGCTGGGAAAAAGGAATTTGATCAACAAATGGAGATTGTTGGGAGGATAGGCCAGCATCGAAACGTCTTACCGCTCCGTGCCTATTACTATTCGAAAGACGAGAAGCTTTTAGTTTACGATTATGCCATCGTTGGAAGCTTTTCGACATTACTCCATGGAACCCGAGAAGGCGGTCGGGTGCCACCGGATTGGGAAACGAGAGTGAAGGTTTCATTAGGGAGTGCCAAAGGCCTTGCACATATTCATTCAAAGTTCATCCATGGAAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTTAATGGTTGTATATCAGATTTTGGGCTGACTCATTTGATGAACTCGGCAGCCGTTCAGTCTAGAAGCATAGGGTATCGAGCTCCTGAGGTGATCGAGACTCGAAAATTGACTCAAAAGTCTGATGTTTATAGCTTTGGAGTTGTTTTGCTCGAGATGTTGACTAGAAAAGCTCCAGCCCAATCGCCGGGGCGCGACCAGGTCATGGACCTTCCTAGATGGGTGCAATCTGTGGTTAGAGAGGAATGGACATCAGAGGTGTTTGATGTAGAGCTAATGAAGTATGAGAACATTGAAGAAGAGTTGGTTCAAATGCTTCAAATAGCAATGGCGTGTGTGTCTCAAGTGCCTGATATGAGACCAGCGATGGAGGAAGTCGTAAGGATGATCGAGGATATCCGACCATCTAGCTCGGGAACTCGACCATCATCAGAAGATAACAAAATTGGAGACGGGAACGGAGATGGAGACAATGACTCGAATACTCCAACCTTGTAA 1890 45.5 MRQQFLSLASSLLILIYFHSIAADLSSDKQALLEFISTVPHGRKLNWDSSTSVCTTWIGITCTSDRSNVLALRLPAVGLHGPILANTLGKLHTLRTLSLRSNNLFGNVPSDVLALPSLKFMYLQHNNFSGKIPSSLSPSLTFLDLSFNDLSGDIPTSIRTLTHLIFLNLQNNSLTGSIPDIAHLKLKLLNLSYNHLSGPIPASLQSFPASSFEGNLKLCGSPLKTCSVNIAPVPVPLSSPPERERSINIGAIVAIGLGGSAVLFLLVLMIIVCCMKKKDGEGNTDAMKGARKRTELPKEDFRSGVHEAEKNRLVFLEGCSYNFDLDDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEMVAGKKEFDQQMEIVGRIGQHRNVLPLRAYYYSKDEKLLVYDYAIVGSFSTLLHGTREGGRVPPDWETRVKVSLGSAKGLAHIHSKFIHGNIKSSNILLTQDLNGCISDFGLTHLMNSAAVQSRSIGYRAPEVIETRKLTQKSDVYSFGVVLLEMLTRKAPAQSPGRDQVMDLPRWVQSVVREEWTSEVFDVELMKYENIEEELVQMLQIAMACVSQVPDMRPAMEEVVRMIEDIRPSSSGTRPSSEDNKIGDGNGDGDNDSNTPTL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6647454 6651850 + CmaCh07G012090.1 Cma07g01209 298524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01209 629 SUPERFAMILY L domain-like 38 222 - -
Cma07g01209 629 Gene3D Phosphorylase Kinase; domain 1 299 405 - -
Cma07g01209 629 Pfam Protein kinase domain 333 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01209 629 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cma07g01209 629 ProSitePatterns Protein kinases ATP-binding region signature. 336 367 IPR017441 GO:0005524
Cma07g01209 629 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Cma07g01209 629 CDD STKc_IRAK 336 597 - -
Cma07g01209 629 PANTHER OS05G0588300 PROTEIN 9 611 - -
Cma07g01209 629 Gene3D Ribonuclease Inhibitor 186 227 IPR032675 -
Cma07g01209 629 Gene3D Transferase(Phosphotransferase) domain 1 408 616 - -
Cma07g01209 629 MobiDBLite consensus disorder prediction 595 629 - -
Cma07g01209 629 PANTHER OS05G0480400 PROTEIN 9 611 - -
Cma07g01209 629 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515
Cma07g01209 629 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Cma07g01209 629 ProSiteProfiles Protein kinase domain profile. 330 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01209 629 SUPERFAMILY Protein kinase-like (PK-like) 334 594 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00285 Cma07g01209 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01209 Cma-Chr7:6647454 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma03g00285 Cma-Chr3:3793710 Cma07g01209 Cma-Chr7:6647454 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68719 PF00069 Pkinase 1.40E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01209 - - csv:101210437 994.571