Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01220 ATGAGTGCTGGTCAGCCCCTGTTGGCTTCATCAGAATCTGCATCAGTTATTGAACACCGGTCCCCATCTCCAAATTTTGGTTCTGCTGGTTCTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTCATGAGGATGCTCAGAGTGACGTCGTGGATGTGAAGGAAAACTGCGCCGCCTCTTTTGGAGATAAAGATTGGAGCGTTGAGGATTCCCTTGGACGCTCCACTTCTCTTTCTAGGAGGCAGTATCATACTATTGGCTCTCTGTTTCCTAACCGGTCACCTTTTGGCGACCCCACGCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGCTACATAGTATCAATGATAACCCTCCGAGCTTTGAACTCTCTAGAGTCCAGGAGAAATTGCATAAGGCACAAAGAAGTCATCATAAGAGTATGCAGTTCGAAGATAATCTACAGCATGACGATAATCCAAGGTTGATATACATCAATGATCCTAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACAACTAGCAAGTACACATTGATTACCTTCTTGCCAAAGAATCTCTTCATTCAGTTCCACCGGGTTGCCTATCTTTATTTTCTTGCTATTGCAGCTCTCAACCAGCTTCCACCTTTGGCGGTCTTTGGGAGAACGGTATCTCTTTTTCCACTCCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTATGAGGATTGGCGAAGACACAGATCAGATCGCAATGAGAACAATAAACAGGCTCTGGTGCTTCAATCGGATGAATTCCGATTGAAAGTGTGGAAAAAAATACGAGCGGGTGAAGTTGTAAAGATTTGTGCAGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCTAGTGGCCTTGCTTACATCCAAACAATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACTGCATCAGCAGTAGCTGAGGGATGCTCGTATTCAGGTCTTATTAGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACGGCCATAAATTTCCCCTCAGCCAGTCGAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACGGAATGGATTATTGGGGTGGTCGTCTATGCTGGACAAGAGACAAAAGCCATGTTAAACAGTGCCGTGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACGTTGTGGTTGTCAATCTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGCTTGTGGCTTGTTCGTCACAAGGAACAGCTTGATACCTTGCCATATTACAGGAAAACGTTTTTCACAACTGGGGCAGAAGATGGCAAGAGGTACAGGTTTTATGGAATACCTATGGAAACCTTTTTCTCCTTTCTGAGTTCGATAATAGTTTTTCAGATCATGATACCGATATCCCTTTACATTACAATGGAGATGGTGAGACTGGGTCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGTAGAATCTCTCGCTCAAGGTTTCAGTGCAGATCATTAAACATCAATGAAGATCTTGGTCAAGTTCGCTACATATTTTCTGATAAAACAGGAACGCTTACTGAAAATAAAATGGAATTCAAAAGAGCAAGTGTATATGGGAGGAATTATGGGAACAACTTGTCTGAGCTATATCCATCATTGTTGTATTCCCTTTCAGAAACTTTAGGGAGGAGGAAGTGGAAACTTAAATCTGACGTTGCTGTTGATACCGATCTTGTCAAATTATTGCATGAGGACCCAAACGGAGATGAGAAGATTGCAGCACATGATTTTTTTCTTACCTTGGCTGCATGCAATACTGTAATTCCTATTCTCATGGATGACGAATCTAGTTATGCGAATGGTGAATTGCATGAGGATTTTGAAACTATTGGTTATCAGGGGGAATCCCCTGATGAACAAGCTCTAGTTGCTGCAGCCTCTGCTTATGGATATACCCTTTTTGAGCGCACATCCGGGCATATAGTTATCGATGTCAAGGGTGAGAACTTAAGGTTAGAAGTTCTGGGTTTACATGAGTTCGATAGCGTTCGCAAAAGAATGTCTGTTGTCATCAAATTCCCCGATAACACTATAAAGGTGCTGGTAAAAGGCGCTGATACTTCAATGTTGAGTATTTTAGGCATCGACTCTGATAGGGAAGAGTTTATCAAGGATACTACCCAGAACCATTTGTGTGATTATTCAATGGAAGGGTTGCGAACACTCGTAGTTGCTGCTAAAGATCTGACAGATTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCTAGTACTTCACTGACTGAACGAGCAGTAAAACTACGTCAGACAGCAGCCCTTATAGAATGTGACCTAAAGCTTTTGGGTGCAACTGCTATCGAGGACAAGCTTCAAGATGGTGTACCTGAAGCCATTGAATCGCTTCGGCAGGCGGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACGGCCATATCAATCGGTCTCTCCTGCAAACTGCTAACTCCAGACATGCAGTCAATTATTATCAATGGAAATTCCGAGAACGATTGCAGGCAACTTTTAGGTGACGCCATAGAAAAATTTGGTATTAAATCTGGGCAGGGCGGAAGTCCTAGACAGAAGCTGAACAATTGTGAGAATGACTGTAACGGTACACTGAAGACGTCTAGTATGCCAGATTTTAATGAAGTGAAAGAAGAAGAAGAAGAAGTGATTGATAAACCACTAGCTCTAATAATAGATGGAAACAGTTTGGTCTACATTTTGGAGAAGGAATTGGAGTCAGAGCTTTTTGACCTTGCAACTTCGTGCAATGTCGTGCTTTGCTGTCGTGTTGCACCCCTGCAGAAAGCAGGAATTGTCGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCGATTGGAGATGGGGCAAATGACGTCTCAATGATTCAGATGGCTGATGTAGGCGTTGGTATATGCGGACAGGAAGGGCGTCAGGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTTTGAAACGATTACTTTTAGTGCATGGACATTGGAACTATCAACGCGTAGGCTACATGGTTCTTTACAACTTTTACCGCAATGCTGTTTTCGTCCTGATGCTCTTCTGGTACATTCTATGCACAGCATTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGCGTGTTTTACTCTGTTATTTATACGTCGATCCCGACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTGACAAAACTCTACTGCAATATCCTAAGCTCTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATCGATACCCTGTGGCAGAGTCTCGTACTCTTCTATGTGCCGTTATACATCTACAGGGAGAGTTCCATTGATATATGGAGCTTGGGAAGTCTGTGGACCATAGCAGTTGTTATACTTGTGAACGTACACTTGGCGATGGATGTTCAACGTTGGGTGTATATTACACATGCTGCAGTTTGGGGATCCATAGTCATAACATATGCCTGCATGGTCGTGTTGGATTCGATACCCGTTTTTCCTAATTACTGGACGATTTTTCATCTGGCCAAGTCCCCGACATATTGGTTGACTATATTGCTCATAATAGTTGTAGGATTGCTTCCGCGTTATCTTTTTAAAGTCGTAAACCAAAGATTTTGGCCCTCAGATATTCAAATAGCCAGAGAAGCTGAGGTACTGGGAAAACGAAAAGGTAACGAACAATTGGGTTCCAAGCAAGATCGAAACTCCGAATAA 3891 42.92 MSAGQPLLASSESASVIEHRSPSPNFGSAGSLCRSASFTSSSHEDAQSDVVDVKENCAASFGDKDWSVEDSLGRSTSLSRRQYHTIGSLFPNRSPFGDPTQDRRRLVSWGAMELHSINDNPPSFELSRVQEKLHKAQRSHHKSMQFEDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNKQALVLQSDEFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAVSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGLWLVRHKEQLDTLPYYRKTFFTTGAEDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISRSRFQCRSLNINEDLGQVRYIFSDKTGTLTENKMEFKRASVYGRNYGNNLSELYPSLLYSLSETLGRRKWKLKSDVAVDTDLVKLLHEDPNGDEKIAAHDFFLTLAACNTVIPILMDDESSYANGELHEDFETIGYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVKGENLRLEVLGLHEFDSVRKRMSVVIKFPDNTIKVLVKGADTSMLSILGIDSDREEFIKDTTQNHLCDYSMEGLRTLVVAAKDLTDSEFELWQSRYEDASTSLTERAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTPDMQSIIINGNSENDCRQLLGDAIEKFGIKSGQGGSPRQKLNNCENDCNGTLKTSSMPDFNEVKEEEEEVIDKPLALIIDGNSLVYILEKELESELFDLATSCNVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYRESSIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVGLLPRYLFKVVNQRFWPSDIQIAREAEVLGKRKGNEQLGSKQDRNSE 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6700783 6706235 + CmaCh07G012200.1 Cma07g01220 298535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01220 1296 Gene3D - 521 541 - -
Cma07g01220 1296 SUPERFAMILY Calcium ATPase, transduction domain A 256 397 IPR008250 -
Cma07g01220 1296 Gene3D - 235 401 - -
Cma07g01220 1296 Pfam E1-E2 ATPase 257 503 - -
Cma07g01220 1296 SFLD p-type atpase 529 1050 IPR044492 -
Cma07g01220 1296 Gene3D - 555 565 IPR023299 GO:0000166
Cma07g01220 1296 SUPERFAMILY Calcium ATPase, transmembrane domain M 173 1266 IPR023298 -
Cma07g01220 1296 Gene3D - 542 554 IPR023214 -
Cma07g01220 1296 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 150 1294 - -
Cma07g01220 1296 Pfam Phospholipid-translocating ATPase N-terminal 159 224 IPR032631 -
Cma07g01220 1296 Pfam Phospholipid-translocating P-type ATPase C-terminal 1027 1267 IPR032630 -
Cma07g01220 1296 MobiDBLite consensus disorder prediction 1 38 - -
Cma07g01220 1296 Gene3D - 659 796 IPR023299 GO:0000166
Cma07g01220 1296 Gene3D - 813 1039 IPR023214 -
Cma07g01220 1296 ProSitePatterns E1-E2 ATPases phosphorylation site. 547 553 IPR018303 -
Cma07g01220 1296 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 478 568 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g01220 1296 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 969 1085 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g01220 1296 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 551 829 IPR023299 GO:0000166
Cma07g01220 1296 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 150 1294 - -
Cma07g01220 1296 SFLD Haloacid Dehalogenase 529 1050 - -
Cma07g01220 1296 SUPERFAMILY HAD-like 540 1045 IPR036412 -
Cma07g01220 1296 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 173 1274 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma07g01220 1296 CDD P-type_ATPase_APLT_Dnf-like 175 1159 - -
Cma07g01220 1296 Pfam Cation transport ATPase (P-type) 662 737 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00292 Cma07g01220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02499 Cma-Chr4:17118124 Cma07g01220 Cma-Chr7:6700783 0 dispersed
Cma07g01220 Cma-Chr7:6700783 Cma15g00540 Cma-Chr15:2516756 0 dispersed
Cma11g01911 Cma-Chr11:12631499 Cma07g01220 Cma-Chr7:6700783 0 dispersed
Cma19g00996 Cma-Chr19:8643941 Cma07g01220 Cma-Chr7:6700783 0 dispersed
Cma07g01220 Cma-Chr7:6700783 Cma03g00292 Cma-Chr3:3818198 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01220 K14802 - csv:101206692 2313.88