Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g01228 | ATGCCGGAATTTGACGGCGGCGACTCTTCATCGGAGGGGATTCTGTTCGGAAAATATGAACTCGGGAAGCTTTTAGGCCGTGGAGCCTTCGCGAAGGTGTACCATGGCAGAAACGTTCATACAGGACAAAGCGTTGCGATTAAAGCTGTTAACAAACTCAAGGTCTTAAATGGCGGTTTCACGGCGCACGTTAAGAGAGAAATTGATATAATGCGCCGCCTCCGCCATCCCAATGTCGTTCGTCTTTTCGAAGTTCTTGCAACGAAGACGAAGATTTATTTCGTAATGGAATTCGCCAAAGGCGGAGAGCTTTTCACGAAGGTTTCCAAAGGGCGATTCAGTGAGAATCTCAGCCGTCGATATTTTCAGCAATTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCACCGCGATTTGAAACCGGAAAATCTCCTTCTCGATGAAAATTTCGATCTCAGAGTTTCGGATTTCGGACTCGGTGCTTTAACGGATCAGATTCGACCCGACGGATTGCTCCATACACTCTGTGGAACTCCGGCGTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGCGCGAAGATCGACGTCTGGTCTTGTGGTATAATCCTCTATGTTCTTACTGCTGGATTTCTTCCGTTTAATGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGTCCAAAATGGACGTCGCCAGATCTCCGGCGGTTTTTATCGCGGCTTCTGGATACGAATCCGGAGACGAGGATCACCGTCGATGAGATTCATCAAGATCCGTGGTTCAGAAAGGGATTTCACGAGGAGAAGATTCAATTCGAGGATTATTCGGTTTCAGAGCTTTACGGCGATATGAACAATGCGAAATGTTTGAATGCTTTTGATTTAATTTCGTTCTCTCTTTGCTTCGATTCAACTGGATTGATCAACGAGACGGAATTTTCGTCCGATGTTGAGAGGTTTCTCTCCGCCGAATCGCCGGAGAAGATCATAATGACGGTGGCGGAGGTTTCGAAGTCGGAAAATGCGGCGGTGGAGAAGAACGGTTGGGGAGCTAAAGTGGAAGGGCACGACGGCGGATTCATCGCCGTTATAGAGATTTTCCGGCTGACGGAGGAATTAGTGGTGGTTGAGATCAAAAACAGAGTGCGAGAAATCGATCAAATTTGGAAAGAAAAATTAAGACCTCAACTCGATTGTTTGATCTTCCAGTCGGAGTAA | 1254 | 47.05 | MPEFDGGDSSSEGILFGKYELGKLLGRGAFAKVYHGRNVHTGQSVAIKAVNKLKVLNGGFTAHVKREIDIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFTKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDENFDLRVSDFGLGALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGFLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFRKGFHEEKIQFEDYSVSELYGDMNNAKCLNAFDLISFSLCFDSTGLINETEFSSDVERFLSAESPEKIIMTVAEVSKSENAAVEKNGWGAKVEGHDGGFIAVIEIFRLTEELVVVEIKNRVREIDQIWKEKLRPQLDCLIFQSE | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6767854 | 6769107 | + | CmaCh07G012280.1 | Cma07g01228 | 298543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g01228 | 417 | Pfam | Protein kinase domain | 19 | 273 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01228 | 417 | Gene3D | Phosphorylase Kinase; domain 1 | 9 | 98 | - | - | |
Cma07g01228 | 417 | PANTHER | - | 9 | 415 | - | - | |
Cma07g01228 | 417 | ProSiteProfiles | Protein kinase domain profile. | 19 | 273 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01228 | 417 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 | 9 | 415 | - | - | |
Cma07g01228 | 417 | CDD | CIPK_C | 303 | 410 | - | - | |
Cma07g01228 | 417 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 137 | 149 | IPR008271 | GO:0004672|GO:0006468 | |
Cma07g01228 | 417 | ProSitePatterns | Protein kinases ATP-binding region signature. | 25 | 48 | IPR017441 | GO:0005524 | |
Cma07g01228 | 417 | SMART | serkin_6 | 19 | 273 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01228 | 417 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 284 | IPR011009 | - | |
Cma07g01228 | 417 | Gene3D | Kinase associated domain 1, KA1 | 298 | 415 | - | - | |
Cma07g01228 | 417 | Pfam | NAF domain | 300 | 358 | IPR004041 | GO:0007165 | |
Cma07g01228 | 417 | Gene3D | Transferase(Phosphotransferase) domain 1 | 99 | 279 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00300 | Cma07g01228 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00704 | Cma-Chr2:4273796 | Cma07g01228 | Cma-Chr7:6767854 | 0 | dispersed | |
Cma07g01228 | Cma-Chr7:6767854 | Cma20g00311 | Cma-Chr20:1543218 | 2.76E-180 | dispersed | |
Cma03g00300 | Cma-Chr3:3897272 | Cma07g01228 | Cma-Chr7:6767854 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68722 | PF00069 | Pkinase | 9.10E-71 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g01228 | - | K12761 | csv:116403168 | 720.694 |