Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01228 ATGCCGGAATTTGACGGCGGCGACTCTTCATCGGAGGGGATTCTGTTCGGAAAATATGAACTCGGGAAGCTTTTAGGCCGTGGAGCCTTCGCGAAGGTGTACCATGGCAGAAACGTTCATACAGGACAAAGCGTTGCGATTAAAGCTGTTAACAAACTCAAGGTCTTAAATGGCGGTTTCACGGCGCACGTTAAGAGAGAAATTGATATAATGCGCCGCCTCCGCCATCCCAATGTCGTTCGTCTTTTCGAAGTTCTTGCAACGAAGACGAAGATTTATTTCGTAATGGAATTCGCCAAAGGCGGAGAGCTTTTCACGAAGGTTTCCAAAGGGCGATTCAGTGAGAATCTCAGCCGTCGATATTTTCAGCAATTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCACCGCGATTTGAAACCGGAAAATCTCCTTCTCGATGAAAATTTCGATCTCAGAGTTTCGGATTTCGGACTCGGTGCTTTAACGGATCAGATTCGACCCGACGGATTGCTCCATACACTCTGTGGAACTCCGGCGTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGCGCGAAGATCGACGTCTGGTCTTGTGGTATAATCCTCTATGTTCTTACTGCTGGATTTCTTCCGTTTAATGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGTCCAAAATGGACGTCGCCAGATCTCCGGCGGTTTTTATCGCGGCTTCTGGATACGAATCCGGAGACGAGGATCACCGTCGATGAGATTCATCAAGATCCGTGGTTCAGAAAGGGATTTCACGAGGAGAAGATTCAATTCGAGGATTATTCGGTTTCAGAGCTTTACGGCGATATGAACAATGCGAAATGTTTGAATGCTTTTGATTTAATTTCGTTCTCTCTTTGCTTCGATTCAACTGGATTGATCAACGAGACGGAATTTTCGTCCGATGTTGAGAGGTTTCTCTCCGCCGAATCGCCGGAGAAGATCATAATGACGGTGGCGGAGGTTTCGAAGTCGGAAAATGCGGCGGTGGAGAAGAACGGTTGGGGAGCTAAAGTGGAAGGGCACGACGGCGGATTCATCGCCGTTATAGAGATTTTCCGGCTGACGGAGGAATTAGTGGTGGTTGAGATCAAAAACAGAGTGCGAGAAATCGATCAAATTTGGAAAGAAAAATTAAGACCTCAACTCGATTGTTTGATCTTCCAGTCGGAGTAA 1254 47.05 MPEFDGGDSSSEGILFGKYELGKLLGRGAFAKVYHGRNVHTGQSVAIKAVNKLKVLNGGFTAHVKREIDIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFTKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDENFDLRVSDFGLGALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGFLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFRKGFHEEKIQFEDYSVSELYGDMNNAKCLNAFDLISFSLCFDSTGLINETEFSSDVERFLSAESPEKIIMTVAEVSKSENAAVEKNGWGAKVEGHDGGFIAVIEIFRLTEELVVVEIKNRVREIDQIWKEKLRPQLDCLIFQSE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6767854 6769107 + CmaCh07G012280.1 Cma07g01228 298543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01228 417 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01228 417 Gene3D Phosphorylase Kinase; domain 1 9 98 - -
Cma07g01228 417 PANTHER - 9 415 - -
Cma07g01228 417 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01228 417 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 9 415 - -
Cma07g01228 417 CDD CIPK_C 303 410 - -
Cma07g01228 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cma07g01228 417 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Cma07g01228 417 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01228 417 SUPERFAMILY Protein kinase-like (PK-like) 15 284 IPR011009 -
Cma07g01228 417 Gene3D Kinase associated domain 1, KA1 298 415 - -
Cma07g01228 417 Pfam NAF domain 300 358 IPR004041 GO:0007165
Cma07g01228 417 Gene3D Transferase(Phosphotransferase) domain 1 99 279 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00300 Cma07g01228 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00704 Cma-Chr2:4273796 Cma07g01228 Cma-Chr7:6767854 0 dispersed
Cma07g01228 Cma-Chr7:6767854 Cma20g00311 Cma-Chr20:1543218 2.76E-180 dispersed
Cma03g00300 Cma-Chr3:3897272 Cma07g01228 Cma-Chr7:6767854 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68722 PF00069 Pkinase 9.10E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01228 - K12761 csv:116403168 720.694