Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01230 ATGGAGAAGAAAGGGGCTATCTTGATGCAACGTTATGAATTAGGAAGGCTATTGGGGCAGGGAACCTTTGCCAAGGTTTACTATGCCAGAGACATTAAAACTGGCTTGTGTGTGGCTATTAAAGTTATTGACAAAGAGAAGATCTCGAAGGTTGGGATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGAATAGTTAAGCATCCGAATGTAGTTGAACTTTATGAGGTTATGGCAAGCAAAACTAAAATTTACTTTGTCATGGAATATGTCAAAGGCGGTGAGCTATTCAATAAGGTATCCAAAGGGAAGCTTAAAGAAGGTGCTGCACGGAAATTCTTTTGGCAGCTGATCAGTGCTATTGATTATTGCCACAGTAGAGGTGTATGGCATCGAGATTTGAAACCAGAAAATTTACTACTGGATGAACATGGTAATCTGAAGGTTTCCGATTTTGGGTTGAGTGCTCTTGTTGAATCTAAATGCCAAGATGGGTTGCTCCATACTACCTGTGGAACACCTGCTTACGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCATGCGGAGTGATCTTATTCGTTCTACTGGCTGGTTATCTCCCATTTCATGATTCAAATCTAATGGAAATGTATAAGAAGATCGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTACGCCAGAGGCGTGCAGGCTATTGTCGAAGATTTTGGATCCTAACCCAAATACTAGGATATCTATTGCCAAAATAATGGGAAGTTCTTGGTCAAGGAGGGGGTTGGATGTGAAACCCCGAATTAATGCAGAAGAAGTGAAAGAAGTCGATCCTTCTGAAGTCGATGCAGTTTTCGGGTCTACAATGGACGAGAGACATTCTGTTAGAGAGCTGAAGCAATTAGTGGAAAAGCCATCGAATTTGAATGCCTTTGACATTATCTCCTTGTCAGCAGGTTTTGATTTGACAGGTTTGTTCGAGGAGACTACTGATCAAAAGAAAGAAGTAAGATTCACATCAAACAAGCCTGCGTCCACCATCATCTCGAAACTGCAGGATGTCGCGAAGTGCATGAAATTGAAAATAAGGAAGAAAGACAGAGGCGTATTGAAGATCGAAGGGTGTAAGGAAGGTCGAAAAGGACCTGTATGCATCGACGCTGAGATTTTTGAGGTTGCCCAATCATTCCATGTAGTCGAAATGAAGAAATCGAACGGAGATACTCTGGAATATCACAAGATCATGAAAGAGGATATAAGACCTGCTCTGAAGGATATTGTATGGACCTGGCAAGGCGAGCAGCAACAGCAAGAACAAGAAGTGCTACAACAGTGTCTTTGA 1365 41.61 MEKKGAILMQRYELGRLLGQGTFAKVYYARDIKTGLCVAIKVIDKEKISKVGMIDQIKREISVMRIVKHPNVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKEGAARKFFWQLISAIDYCHSRGVWHRDLKPENLLLDEHGNLKVSDFGLSALVESKCQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFTPEACRLLSKILDPNPNTRISIAKIMGSSWSRRGLDVKPRINAEEVKEVDPSEVDAVFGSTMDERHSVRELKQLVEKPSNLNAFDIISLSAGFDLTGLFEETTDQKKEVRFTSNKPASTIISKLQDVAKCMKLKIRKKDRGVLKIEGCKEGRKGPVCIDAEIFEVAQSFHVVEMKKSNGDTLEYHKIMKEDIRPALKDIVWTWQGEQQQQEQEVLQQCL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6791652 6793016 - CmaCh07G012300.1 Cma07g01230 298545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01230 454 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01230 454 Gene3D Transferase(Phosphotransferase) domain 1 92 271 - -
Cma07g01230 454 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01230 454 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Cma07g01230 454 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Cma07g01230 454 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cma07g01230 454 PANTHER - 2 447 - -
Cma07g01230 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cma07g01230 454 Gene3D Kinase associated domain 1, KA1 310 437 - -
Cma07g01230 454 Pfam NAF domain 313 372 IPR004041 GO:0007165
Cma07g01230 454 CDD CIPK_C 317 432 - -
Cma07g01230 454 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cma07g01230 454 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01230 454 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 447 - -
Cma07g01230 454 CDD STKc_SnRK3 11 265 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00303 Cma07g01230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00303 Cma-Chr3:3915626 Cma07g01230 Cma-Chr7:6791652 0 dispersed
Cma03g01326 Cma-Chr3:8539246 Cma07g01230 Cma-Chr7:6791652 4.51E-177 dispersed
Cma07g00182 Cma-Chr7:871594 Cma07g01230 Cma-Chr7:6791652 6.70E-180 dispersed
Cma07g01230 Cma-Chr7:6791652 Cma18g00420 Cma-Chr18:2300342 0 dispersed
Cma14g02137 Cma-Chr14:14655135 Cma07g01230 Cma-Chr7:6791652 3.62E-166 dispersed
Cma20g00312 Cma-Chr20:1546301 Cma07g01230 Cma-Chr7:6791652 9.00E-112 dispersed
Cma07g01230 Cma-Chr7:6791652 Cma13g00599 Cma-Chr13:5887321 0 transposed
Cma07g01230 Cma-Chr7:6791652 Cma02g00706 Cma-Chr2:4277266 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68723 PF00069 Pkinase 1.90E-74 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01230 K07198 - csv:101209068 763.066