Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g01230 | ATGGAGAAGAAAGGGGCTATCTTGATGCAACGTTATGAATTAGGAAGGCTATTGGGGCAGGGAACCTTTGCCAAGGTTTACTATGCCAGAGACATTAAAACTGGCTTGTGTGTGGCTATTAAAGTTATTGACAAAGAGAAGATCTCGAAGGTTGGGATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGAATAGTTAAGCATCCGAATGTAGTTGAACTTTATGAGGTTATGGCAAGCAAAACTAAAATTTACTTTGTCATGGAATATGTCAAAGGCGGTGAGCTATTCAATAAGGTATCCAAAGGGAAGCTTAAAGAAGGTGCTGCACGGAAATTCTTTTGGCAGCTGATCAGTGCTATTGATTATTGCCACAGTAGAGGTGTATGGCATCGAGATTTGAAACCAGAAAATTTACTACTGGATGAACATGGTAATCTGAAGGTTTCCGATTTTGGGTTGAGTGCTCTTGTTGAATCTAAATGCCAAGATGGGTTGCTCCATACTACCTGTGGAACACCTGCTTACGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCATGCGGAGTGATCTTATTCGTTCTACTGGCTGGTTATCTCCCATTTCATGATTCAAATCTAATGGAAATGTATAAGAAGATCGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTACGCCAGAGGCGTGCAGGCTATTGTCGAAGATTTTGGATCCTAACCCAAATACTAGGATATCTATTGCCAAAATAATGGGAAGTTCTTGGTCAAGGAGGGGGTTGGATGTGAAACCCCGAATTAATGCAGAAGAAGTGAAAGAAGTCGATCCTTCTGAAGTCGATGCAGTTTTCGGGTCTACAATGGACGAGAGACATTCTGTTAGAGAGCTGAAGCAATTAGTGGAAAAGCCATCGAATTTGAATGCCTTTGACATTATCTCCTTGTCAGCAGGTTTTGATTTGACAGGTTTGTTCGAGGAGACTACTGATCAAAAGAAAGAAGTAAGATTCACATCAAACAAGCCTGCGTCCACCATCATCTCGAAACTGCAGGATGTCGCGAAGTGCATGAAATTGAAAATAAGGAAGAAAGACAGAGGCGTATTGAAGATCGAAGGGTGTAAGGAAGGTCGAAAAGGACCTGTATGCATCGACGCTGAGATTTTTGAGGTTGCCCAATCATTCCATGTAGTCGAAATGAAGAAATCGAACGGAGATACTCTGGAATATCACAAGATCATGAAAGAGGATATAAGACCTGCTCTGAAGGATATTGTATGGACCTGGCAAGGCGAGCAGCAACAGCAAGAACAAGAAGTGCTACAACAGTGTCTTTGA | 1365 | 41.61 | MEKKGAILMQRYELGRLLGQGTFAKVYYARDIKTGLCVAIKVIDKEKISKVGMIDQIKREISVMRIVKHPNVVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKEGAARKFFWQLISAIDYCHSRGVWHRDLKPENLLLDEHGNLKVSDFGLSALVESKCQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFTPEACRLLSKILDPNPNTRISIAKIMGSSWSRRGLDVKPRINAEEVKEVDPSEVDAVFGSTMDERHSVRELKQLVEKPSNLNAFDIISLSAGFDLTGLFEETTDQKKEVRFTSNKPASTIISKLQDVAKCMKLKIRKKDRGVLKIEGCKEGRKGPVCIDAEIFEVAQSFHVVEMKKSNGDTLEYHKIMKEDIRPALKDIVWTWQGEQQQQEQEVLQQCL | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6791652 | 6793016 | - | CmaCh07G012300.1 | Cma07g01230 | 298545 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g01230 | 454 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01230 | 454 | Gene3D | Transferase(Phosphotransferase) domain 1 | 92 | 271 | - | - | |
Cma07g01230 | 454 | Pfam | Protein kinase domain | 12 | 265 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01230 | 454 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 276 | IPR011009 | - | |
Cma07g01230 | 454 | ProSiteProfiles | NAF domain profile. | 311 | 335 | IPR018451 | GO:0007165 | |
Cma07g01230 | 454 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 91 | - | - | |
Cma07g01230 | 454 | PANTHER | - | 2 | 447 | - | - | |
Cma07g01230 | 454 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672|GO:0006468 | |
Cma07g01230 | 454 | Gene3D | Kinase associated domain 1, KA1 | 310 | 437 | - | - | |
Cma07g01230 | 454 | Pfam | NAF domain | 313 | 372 | IPR004041 | GO:0007165 | |
Cma07g01230 | 454 | CDD | CIPK_C | 317 | 432 | - | - | |
Cma07g01230 | 454 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524 | |
Cma07g01230 | 454 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01230 | 454 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 | 2 | 447 | - | - | |
Cma07g01230 | 454 | CDD | STKc_SnRK3 | 11 | 265 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00303 | Cma07g01230 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00303 | Cma-Chr3:3915626 | Cma07g01230 | Cma-Chr7:6791652 | 0 | dispersed | |
Cma03g01326 | Cma-Chr3:8539246 | Cma07g01230 | Cma-Chr7:6791652 | 4.51E-177 | dispersed | |
Cma07g00182 | Cma-Chr7:871594 | Cma07g01230 | Cma-Chr7:6791652 | 6.70E-180 | dispersed | |
Cma07g01230 | Cma-Chr7:6791652 | Cma18g00420 | Cma-Chr18:2300342 | 0 | dispersed | |
Cma14g02137 | Cma-Chr14:14655135 | Cma07g01230 | Cma-Chr7:6791652 | 3.62E-166 | dispersed | |
Cma20g00312 | Cma-Chr20:1546301 | Cma07g01230 | Cma-Chr7:6791652 | 9.00E-112 | dispersed | |
Cma07g01230 | Cma-Chr7:6791652 | Cma13g00599 | Cma-Chr13:5887321 | 0 | transposed | |
Cma07g01230 | Cma-Chr7:6791652 | Cma02g00706 | Cma-Chr2:4277266 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68723 | PF00069 | Pkinase | 1.90E-74 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g01230 | K07198 | - | csv:101209068 | 763.066 |