Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01264 ATGGGAAAGGAAAATTTGTTGCAGTGTGTTGATGAAAATGCTGAAGTGAATGGTTGTTCAACAATTGGGAATGATGAAGATTTGGGTGCTCAGTCTCCCCATAGTGTAGGCAAGGAATTTGGGGCAAGTTGTCGTGTGTGTCAATGTACTGAATCGGACAGAAGGGGTGATGCTGCCTTAGGATTTCTTGGCATCACTTCTCCGAAAATGGAAGCAAGAAAAAACGACGGGGATTCTAAGGCCGAGAAGCAAAGTGTAAAAAATGTTAAAAGGGATTCTGGTTCAATTGAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATATCATTATGAAGATGCATTAGTCAAGCTTGGATGTTCTTGCAAGAGTGACCTTGCTCTCGTACATTATGCGTGTGCTCTCAAGTGGTTTGTCAATCATGGATCTACAGTTTGCGAAATCTGTGGATGTGTTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTTAATTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGTTAATGGGGAACCTAATCCTATGCATACTAATATCGGTACTGATATAGATCCTGATGCTGTTGCTGCCATCCGCAGGCAGCGACTTTGTGAAATCTCGTTGTGGTTTAGTCCTCATAATTATAGTAGCAACAATAATTCTACTGCAGCCTCCCAGGTTGCTTCGGAACATCCGAATATCATCTTGGAAAATGTTATTCATGCTGAAAATCCTGCAACCAGATGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACTGGACTGCTTACTGTTACGCTCGCTTGCCTAATAGCTCCTCGTCTGGGGAAGAAAACTGCGAAAAGTGGCCTTTGCATTCTTCTTGGAGGAGTTTGTGCGTTAGCCGTGGTTGTTTTCTTCCGCTTTTTTGTGCTTACCAGGATAAAATACAGTCTTGCACGATATTGGGCTATTTTGTTCATCTTTTTGTTCCTGGTGTTGTTCGGCATTTGGGCATCGAGGACGCATAGTGCTCATACGACGTAA 1062 42.28 MGKENLLQCVDENAEVNGCSTIGNDEDLGAQSPHSVGKEFGASCRVCQCTESDRRGDAALGFLGITSPKMEARKNDGDSKAEKQSVKNVKRDSGSIEFIGPNGEVFICKADIEMGSYHYEDALVKLGCSCKSDLALVHYACALKWFVNHGSTVCEICGCVAENIRTDDFRKVVNSLKEYEALRERTVNGEPNPMHTNIGTDIDPDAVAAIRRQRLCEISLWFSPHNYSSNNNSTAASQVASEHPNIILENVIHAENPATRWAVEGTGILLATGLLTVTLACLIAPRLGKKTAKSGLCILLGGVCALAVVVFFRFFVLTRIKYSLARYWAILFIFLFLVLFGIWASRTHSAHTT 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7013501 7016845 + CmaCh07G012640.1 Cma07g01264 298579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01264 353 Pfam RING-variant domain 123 157 IPR011016 GO:0008270
Cma07g01264 353 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 26 352 - -
Cma07g01264 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 160 IPR013083 -
Cma07g01264 353 ProSiteProfiles Zinc finger RING-CH-type profile. 100 164 IPR011016 GO:0008270
Cma07g01264 353 SMART ringv_2 107 158 IPR011016 GO:0008270
Cma07g01264 353 SUPERFAMILY RING/U-box 123 160 - -
Cma07g01264 353 PANTHER ZINC FINGER, RING-CH-TYPE 26 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00037 Cma-Chr3:319971 Cma07g01264 Cma-Chr7:7013501 0 dispersed
Cma07g01264 Cma-Chr7:7013501 Cma01g01329 Cma-Chr1:9492264 6.07E-08 dispersed
Cma07g01264 Cma-Chr7:7013501 Cma17g00301 Cma-Chr17:1607153 8.71E-08 transposed
Cma07g01264 Cma-Chr7:7013501 Cma14g00100 Cma-Chr14:436891 2.90E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01264 - - csv:101218157 538.495