Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01266 ATGGCGGCAGCTCAGCTCACAGGATCTCTAATTTCTGCGAAGAATCTGCCTTCTTTCAATGGGCTTCGTCCTTCTGCGGTGAAATTCTCTCCTTCTATCGCTCATATGATAGTGGGGGGTCGGGCCAACAGATCTTACACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCGATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCTCAAGGTGGGGAGGTTGTTGCTATTGGAGAAGGCAAGTCAATCGGAAATACCAAAGTGGAAAGTAGTGTAAAGACTGGTGCTCAAGTTGTGTACTCCAAGTATGCTGGAACTGAGTTAGAGTTCAATGGTTCAAAGCATCTTATTCTGAAGGAAGATGATATCGTGGCTGCGGCTGAGGAAAAAACAGCAGGAGGTTTGTTGCTGACAGAGGCATCCAAAGAGAAACCGTCGATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGACGAGGAGGGCAACAAGAAACCGCTTTCGATTGCAGCGGGAAATAACGTTATGTACTCGAAGTATGCTGGGAACGAGTTCAAGGGCAAAGATGGGTCTGATTACATCGCTTTGAGGGCTTCAGACGTGATTGCAATTCTATCTTAG 702 47.44 MAAAQLTGSLISAKNLPSFNGLRPSAVKFSPSIAHMIVGGRANRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAIGEGKSIGNTKVESSVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVAAAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLDEEGNKKPLSIAAGNNVMYSKYAGNEFKGKDGSDYIALRASDVIAILS 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7022124 7025076 + CmaCh07G012660.1 Cma07g01266 298581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01266 233 SMART Cpn10_2 155 232 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 Gene3D GroES chaperonin 153 233 IPR037124 GO:0006457
Cma07g01266 233 Gene3D GroES chaperonin 56 152 IPR037124 GO:0006457
Cma07g01266 233 CDD cpn10 153 232 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 233 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 233 - -
Cma07g01266 233 SUPERFAMILY GroES-like 153 232 IPR011032 -
Cma07g01266 233 CDD cpn10 63 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 PIRSF Cpn21 1 154 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cma07g01266 233 PIRSF Cpn21 151 233 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cma07g01266 233 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
Cma07g01266 233 SUPERFAMILY GroES-like 62 155 IPR011032 -
Cma07g01266 233 Pfam Chaperonin 10 Kd subunit 64 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma07g01266 233 Pfam Chaperonin 10 Kd subunit 153 231 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01266 Cma-Chr7:7022124 Cma10g00786 Cma-Chr10:3598452 2.15E-140 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01266 K04078 - csv:101212396 394.815