Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01286 ATGTTGGATTTCATTCTTTGTCGGCATCTGATCGGAGATCGCGATTTGCTGCAGCCATTAATGTGGTCTAAGTCCGATAATAAACCGGACGGATCTGAGATATTTAGCAACTCGTCAAAAGGGGAAAACGATTGTCACGGAGGAATGAACGTAAACGCACCAAATTTCGTGAAAAATCCTCCGGATTCTCTCAGAAGAATCGATCAAATCGCCAAAAACGGCATAAATTCCGGGAATCAGACGGCGACGATGAACCACGAGTTTCATTCCGGGCAGGCAGGGGGGTCGATTGCGCCGATTCCGAGCGGTGCACCTGCAACAAACATGAAGTACATCAACAATAACAACTCTACTTTCTTTCCGACGAAGAGCGGCTGCGATGGCATGGAGACGCTAGGAATGGTGATTAAACCGCACACAGGCGGGGATGTGCGATGGGACGCTGTGAACATGGTGTCGAAAGGAGGCCAGTTGAATCTGAGCCATTTCAGGCTTCTGAAGCGGCTTGGTTATGGCGATATCGGAAGTGTTTATCTGGTGGAATTGAGAGGAACTGATACGTTTTTCGCCATGAAAGTTATGGACAAAGCTTCATTGGCGAGTCGGAATAAGGTTGTTAGGGCACAGACGGAGAGGGAGATTTTAGGGCTTTTGGATCATCCATTTTTGCCGACTCTGTATTCCTATTTCGAAACTGATAAGTTCTATTGCTTGGTTATGGAGTTTTGTAGCGGCGGAAATCTTCATTCTCTTCGTCAGAAACAACCTAACAAGTATTTCACAGAAGAAGCTGCCAGATTCTATGCATCAGAAGTTCTATTGGCACTCGAATATCTTCACATGTTAGGAATAGTTTACAGAGATTTGAAACCAGAGAACCTGTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGCCCTACTCTCGTCAAATCCTCCTCCGTCAATGTCAATGGCAGCTCCACTACAGGACACGCCGGCACGAACGGTGGCGGCAGCGGCAGCGGCAGCGGCGGTATCCTCGACGACGAGTTCGCCGTCCATGGATGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGCAAGTCGAAATCCGACTTCGGCCTCTTCGTCGGCGGAGCATTGCCGGAACTCATGGCGGAGCCGACGAATGTTAGATCGATGTCGTTTGTCGGCACGCACGAGTATTTAGCGCCGGAGATCATCCAAGGCGAAGGCCATGGCAGCGCCGTTGACTGGTGGACATTTGGAATCTTCCTCTACGAGCTTCTTCACGGAACAACGCCGTTTAAAGGATCTGGAAATAGAGCTACTCTGTTTAATGTTGTCGGACAGCCGCTTAGATTCCCGGAGACGCCGCAGGTGAGTCTACAGGCGAGGGATCTGATCAGAGGCCTTCTTGTGAAGGAGCCGCAAAAGAGAATCGCGTACAGAAGAGGCGCTACTGAGATTAAACAGCATCCGTTCTTCGATGGAGTGAACTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTGCCGGAGCCGGTCGACTTCTCACAGTTCGCCCGTAAGAAGAGCGGTGGAGGCAGTGGCGGTGGAGCGGTAGAAGTAGCAGCGACGGCGGCATCACCTGGGGAGAGTCCTTCGCCTTCTACTGGACGCGATCCCAATTATGTGGATTTTGAATACTTCTAG 1725 50.9 MLDFILCRHLIGDRDLLQPLMWSKSDNKPDGSEIFSNSSKGENDCHGGMNVNAPNFVKNPPDSLRRIDQIAKNGINSGNQTATMNHEFHSGQAGGSIAPIPSGAPATNMKYINNNNSTFFPTKSGCDGMETLGMVIKPHTGGDVRWDAVNMVSKGGQLNLSHFRLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKVVRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSTTGHAGTNGGGSGSGSGGILDDEFAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGALPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPETPQVSLQARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKSGGGSGGGAVEVAATAASPGESPSPSTGRDPNYVDFEYF 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7254872 7256997 + CmaCh07G012860.1 Cma07g01286 298601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01286 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Cma07g01286 574 SMART serkin_6 163 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01286 574 Gene3D Transferase(Phosphotransferase) domain 1 382 524 - -
Cma07g01286 574 Gene3D Transferase(Phosphotransferase) domain 1 247 316 - -
Cma07g01286 574 PANTHER FLIPPASE KINASE 1-RELATED 112 574 - -
Cma07g01286 574 ProSiteProfiles Protein kinase domain profile. 163 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01286 574 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 112 574 - -
Cma07g01286 574 CDD STKc_phototropin_like 161 527 - -
Cma07g01286 574 Gene3D Phosphorylase Kinase; domain 1 161 246 - -
Cma07g01286 574 MobiDBLite consensus disorder prediction 531 569 - -
Cma07g01286 574 Pfam Protein kinase domain 164 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01286 574 Pfam Protein kinase domain 400 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01286 574 MobiDBLite consensus disorder prediction 325 345 - -
Cma07g01286 574 SUPERFAMILY Protein kinase-like (PK-like) 160 530 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01286 Cma-Chr7:7254872 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma03g00103 Cma-Chr3:1066159 Cma07g01286 Cma-Chr7:7254872 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68724 PF00069 Pkinase 1.60E-37 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01286 - - cmos:111435499 877.856