Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g01287 | ATGGGAGACAACAATAACACCAACAGAGGCCTTGTTTCGGCCAACGCCGCCGCTAATTCCAACCGGAACAACAACGGCAGCCACCACAAGAAGCCGGAGTGGCTGCAGCAGTACGATCTAATAGGGAAGATCGGAGAGGGTACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCGAGTCGCGGTAAGTCCATTGCCATCAAGAAGTTCAAGCAATCCAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATAACACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAATCATACAGATATGTCGCTGTATCTAGCTTTTGATTATGCTGAACATGACCTTTATGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCTTTGCTTTGGCAACTTCTCAATGGATTGAACTATCTCCACAGTAATTGGATAATTCATCGTGATTTAAAGCCATCGAATATTTTGGTAATGGGTGAAGGAGAAGAACAAGGATTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAACTTCTCCTTGGAGCAAAACACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCTGAGCTCTTGACACTGAAGCCATTGTTTCAAGGGCAAGAAGTCAAAGGGAATCCAAATCCTTTCCAGCTTGATCAACTCGACAAGATATTTAAGGTTTTAGGTCATCCCACGGTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATTTACAGCATATACAGGGACATAAATATGACACTGCTGGATTGTTTAATGTTGTGCACCTTTCTCCAAAAAGTCCTGCGTATGATCTTCTATCCAAAATGCTTGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCTCTTGAGCATGAGTATTTTCGATTAGAACCACTGCCAGGATACAATGCCCTAGTACCAATTCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACGGATTTTGAGGGAACAACTAGCCTTCAGCCCCCACAAACGGCGTCTGGAAATGCTGTAAACATGCAAGGTGCTCATGCTGTGGCAGGCAGATCTGTCCCTCGGCCGATGATAGGAGTTGGCATGCCAAGGATGCCGCCTCAGGGCATGGGTCCTTATAACCTTGCATCTCAGGCTGGGATGGGCATGAATCCTGGTGGCATCCCTATGCAGCGTGGTGTTTCTGCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCAGGAATGGGAATGCCTGGCTATCCTCCACAGCAGAAACAACAAAGACGCTACTGA | 1461 | 45.72 | MGDNNNTNRGLVSANAAANSNRNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGLVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGNPNPFQLDQLDKIFKVLGHPTVEKWPTLANLPHWQQDLQHIQGHKYDTAGLFNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTSLQPPQTASGNAVNMQGAHAVAGRSVPRPMIGVGMPRMPPQGMGPYNLASQAGMGMNPGGIPMQRGVSAQAHQQQQLRRKDPGMGMPGYPPQQKQQRRY | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7258343 | 7266827 | + | CmaCh07G012870.1 | Cma07g01287 | 298602 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g01287 | 486 | SMART | serkin_6 | 38 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01287 | 486 | ProSiteProfiles | Protein kinase domain profile. | 38 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01287 | 486 | PANTHER | CYCLIN-DEPENDENT KINASE E-1 | 26 | 480 | - | - | |
Cma07g01287 | 486 | Gene3D | Phosphorylase Kinase; domain 1 | 17 | 120 | - | - | |
Cma07g01287 | 486 | ProSitePatterns | Protein kinases ATP-binding region signature. | 44 | 72 | IPR017441 | GO:0005524 | |
Cma07g01287 | 486 | SUPERFAMILY | Protein kinase-like (PK-like) | 33 | 350 | IPR011009 | - | |
Cma07g01287 | 486 | CDD | STKc_CDK8_like | 37 | 349 | - | - | |
Cma07g01287 | 486 | Gene3D | Transferase(Phosphotransferase) domain 1 | 121 | 360 | - | - | |
Cma07g01287 | 486 | Pfam | Protein kinase domain | 38 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma07g01287 | 486 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 166 | 178 | IPR008271 | GO:0004672|GO:0006468 | |
Cma07g01287 | 486 | PANTHER | CELL DIVISION PROTEIN KINASE | 26 | 480 | - | - | |
Cma07g01287 | 486 | MobiDBLite | consensus disorder prediction | 445 | 486 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g01287 | Cma-Chr7:7258343 | Cma18g00715 | Cma-Chr18:6477536 | 3.61E-79 | dispersed | |
Cma07g01287 | Cma-Chr7:7258343 | Cma05g00076 | Cma-Chr5:321607 | 3.72E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68725 | PF00069 | Pkinase | 2.50E-68 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g01287 | K02208 | - | csv:101203984 | 899.812 |