Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01287 ATGGGAGACAACAATAACACCAACAGAGGCCTTGTTTCGGCCAACGCCGCCGCTAATTCCAACCGGAACAACAACGGCAGCCACCACAAGAAGCCGGAGTGGCTGCAGCAGTACGATCTAATAGGGAAGATCGGAGAGGGTACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCGAGTCGCGGTAAGTCCATTGCCATCAAGAAGTTCAAGCAATCCAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATAACACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAATCATACAGATATGTCGCTGTATCTAGCTTTTGATTATGCTGAACATGACCTTTATGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCTTTGCTTTGGCAACTTCTCAATGGATTGAACTATCTCCACAGTAATTGGATAATTCATCGTGATTTAAAGCCATCGAATATTTTGGTAATGGGTGAAGGAGAAGAACAAGGATTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAACTTCTCCTTGGAGCAAAACACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCTGAGCTCTTGACACTGAAGCCATTGTTTCAAGGGCAAGAAGTCAAAGGGAATCCAAATCCTTTCCAGCTTGATCAACTCGACAAGATATTTAAGGTTTTAGGTCATCCCACGGTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATTTACAGCATATACAGGGACATAAATATGACACTGCTGGATTGTTTAATGTTGTGCACCTTTCTCCAAAAAGTCCTGCGTATGATCTTCTATCCAAAATGCTTGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCTCTTGAGCATGAGTATTTTCGATTAGAACCACTGCCAGGATACAATGCCCTAGTACCAATTCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACGGATTTTGAGGGAACAACTAGCCTTCAGCCCCCACAAACGGCGTCTGGAAATGCTGTAAACATGCAAGGTGCTCATGCTGTGGCAGGCAGATCTGTCCCTCGGCCGATGATAGGAGTTGGCATGCCAAGGATGCCGCCTCAGGGCATGGGTCCTTATAACCTTGCATCTCAGGCTGGGATGGGCATGAATCCTGGTGGCATCCCTATGCAGCGTGGTGTTTCTGCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCAGGAATGGGAATGCCTGGCTATCCTCCACAGCAGAAACAACAAAGACGCTACTGA 1461 45.72 MGDNNNTNRGLVSANAAANSNRNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGLVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGNPNPFQLDQLDKIFKVLGHPTVEKWPTLANLPHWQQDLQHIQGHKYDTAGLFNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTSLQPPQTASGNAVNMQGAHAVAGRSVPRPMIGVGMPRMPPQGMGPYNLASQAGMGMNPGGIPMQRGVSAQAHQQQQLRRKDPGMGMPGYPPQQKQQRRY 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7258343 7266827 + CmaCh07G012870.1 Cma07g01287 298602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01287 486 SMART serkin_6 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01287 486 ProSiteProfiles Protein kinase domain profile. 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01287 486 PANTHER CYCLIN-DEPENDENT KINASE E-1 26 480 - -
Cma07g01287 486 Gene3D Phosphorylase Kinase; domain 1 17 120 - -
Cma07g01287 486 ProSitePatterns Protein kinases ATP-binding region signature. 44 72 IPR017441 GO:0005524
Cma07g01287 486 SUPERFAMILY Protein kinase-like (PK-like) 33 350 IPR011009 -
Cma07g01287 486 CDD STKc_CDK8_like 37 349 - -
Cma07g01287 486 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Cma07g01287 486 Pfam Protein kinase domain 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g01287 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cma07g01287 486 PANTHER CELL DIVISION PROTEIN KINASE 26 480 - -
Cma07g01287 486 MobiDBLite consensus disorder prediction 445 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01287 Cma-Chr7:7258343 Cma18g00715 Cma-Chr18:6477536 3.61E-79 dispersed
Cma07g01287 Cma-Chr7:7258343 Cma05g00076 Cma-Chr5:321607 3.72E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68725 PF00069 Pkinase 2.50E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01287 K02208 - csv:101203984 899.812