Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g01290 | ATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCTTTCAGTTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCACGAACTCGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGTTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCAGTCACGGGCGACATCCAGTCTCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTTAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTCTTACGATTCATGGGTGACGATAACGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGGAAAGTTCGTGACAGTCAAGATGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGGGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACAGGCCGAATATGGAAGGAAGAATGA | 921 | 45.93 | MAPGSSTCKKVDSHLSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7273739 | 7277197 | - | CmaCh07G012900.1 | Cma07g01290 | 298605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g01290 | 306 | CDD | RING-HC_SIAHs | 56 | 94 | - | - | |
| Cma07g01290 | 306 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED | 1 | 306 | - | - | |
| Cma07g01290 | 306 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 306 | - | - | |
| Cma07g01290 | 306 | SUPERFAMILY | TRAF domain-like | 111 | 303 | - | - | |
| Cma07g01290 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 164 | IPR013083 | - | |
| Cma07g01290 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 110 | IPR013083 | - | |
| Cma07g01290 | 306 | Pfam | Seven in absentia protein family | 100 | 299 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Cma07g01290 | 306 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 299 | IPR008974 | GO:0005515 | |
| Cma07g01290 | 306 | SUPERFAMILY | RING/U-box | 52 | 99 | - | - | |
| Cma07g01290 | 306 | CDD | Sina | 172 | 300 | - | - | |
| Cma07g01290 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 94 | IPR001841 | - | |
| Cma07g01290 | 306 | ProSiteProfiles | Zinc finger SIAH-type profile. | 111 | 171 | IPR013010 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g01290 | Cma-Chr7:7273739 | Cma18g01332 | Cma-Chr18:10151205 | 1.09E-148 | dispersed | |
| Cma03g00101 | Cma-Chr3:1054954 | Cma07g01290 | Cma-Chr7:7273739 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g01290 | K04506 | - | cpap:110811721 | 567.77 |