Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g01290 ATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCTTTCAGTTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCACGAACTCGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGTTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCAGTCACGGGCGACATCCAGTCTCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTTAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTCTTACGATTCATGGGTGACGATAACGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGGAAAGTTCGTGACAGTCAAGATGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGGGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACAGGCCGAATATGGAAGGAAGAATGA 921 45.93 MAPGSSTCKKVDSHLSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 7273739 7277197 - CmaCh07G012900.1 Cma07g01290 298605
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma07g01290 306 CDD RING-HC_SIAHs 56 94 - -
Cma07g01290 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 306 - -
Cma07g01290 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Cma07g01290 306 SUPERFAMILY TRAF domain-like 111 303 - -
Cma07g01290 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 164 IPR013083 -
Cma07g01290 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 110 IPR013083 -
Cma07g01290 306 Pfam Seven in absentia protein family 100 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma07g01290 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 299 IPR008974 GO:0005515
Cma07g01290 306 SUPERFAMILY RING/U-box 52 99 - -
Cma07g01290 306 CDD Sina 172 300 - -
Cma07g01290 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Cma07g01290 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01290 Cma-Chr7:7273739 Cma18g01332 Cma-Chr18:10151205 1.09E-148 dispersed
Cma03g00101 Cma-Chr3:1054954 Cma07g01290 Cma-Chr7:7273739 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g01290 K04506 - cpap:110811721 567.77